Construct: ORF TRCN0000479183
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016292.1_s317c1
- Derived from:
- ccsbBroadEn_04710
- DNA Barcode:
- AAACGTTAGTTCCCGCCGTTCCAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TM4SF18 (116441)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479183
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 116441 | TM4SF18 | transmembrane 4 L six famil... | NM_001184723.2 | 100% | 100% | |
| 2 | human | 116441 | TM4SF18 | transmembrane 4 L six famil... | NM_138786.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 669
- ORF length:
- 603
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg gtctcggaag tgtggaggct gcctaagttg tttgctgatt ccgcttgcac 121 tttggagtat aatcgtgaac atattattgt atttcccgaa tgggcaaact tcctatgcat 181 ccagcaataa actcaccaac tacgtgtggt attttgaagg aatctgtttc tcaggcatca 241 tgatgcttat agtaacaaCA GTTCTTCTGG TACTGGAGAA TAATAACAAC TATAAATGTT 301 GCCAGAGTGA AAACTGCAGC AAAAAATATG TGACACTGCT GTCAATTATC TTTTCTTCCC 361 TCGGAATTGC TTTTTCTGGA TACTGCCTGG TCATCTCTGC CTTGGGTCTT GTCCAAGGGC 421 CATATTGCCG CACCCTTGAT GGCTGGGAGT ATGCTTTTGA AGGCACTGCT GGACGTTTCC 481 TTACAGATTC TAGCATATGG ATTCAGTGCC TGGAACCTGC ACATGTTGTG GAGTGGAACA 541 TCATTTTATT TTCCATTCTC ATAACCCTCA GTGGGCTTCA AGTGATCATC TGCCTCATCA 601 GAGTAGTCAT GCAACTATCC AAGATACTGT GTGGAAGCTA TTCAGTGATC TTCCAGCCTG 661 GAATCATTTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 721 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 781 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAAAACGT TAGTTCCCGC CGTTCCAGAC 841 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt