Construct: ORF TRCN0000479766
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016561.1_s317c1
- Derived from:
- ccsbBroadEn_02198
- DNA Barcode:
- AATGGCATATCACTGCGGAATCAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCL4L2 (9560)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479766
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 388372 | CCL4L1 | C-C motif chemokine ligand ... | NM_207007.3 | 100% | 100% | |
| 2 | human | 6351 | CCL4 | C-C motif chemokine ligand 4 | NM_002984.4 | 97.4% | 96.7% | (many diffs) |
| 3 | human | 9560 | CCL4L2 | C-C motif chemokine ligand ... | NM_001291468.2 | 94.5% | 94.5% | 191_192insATTCCAAACCAAAAG |
| 4 | human | 9560 | CCL4L2 | C-C motif chemokine ligand ... | NM_001291473.2 | 78.3% | 69% | (many diffs) |
| 5 | human | 9560 | CCL4L2 | C-C motif chemokine ligand ... | NM_001291475.2 | 73.7% | 66.9% | (many diffs) |
| 6 | human | 9560 | CCL4L2 | C-C motif chemokine ligand ... | NM_001291472.2 | 73.3% | 64.1% | (many diffs) |
| 7 | human | 9560 | CCL4L2 | C-C motif chemokine ligand ... | NM_001291471.2 | 69.5% | 58.9% | (many diffs) |
| 8 | human | 9560 | CCL4L2 | C-C motif chemokine ligand ... | NM_001291469.2 | 69.2% | 69.5% | 192_192delCins85 |
| 9 | human | 9560 | CCL4L2 | C-C motif chemokine ligand ... | NM_001291470.2 | 69.2% | 69.5% | 192_192delGins85 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 369
- ORF length:
- 276
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGAAGCT CTGCGTGACT GTCCTGTCTC 121 TCCTCGTGCT AGTAGCTGCC TTCTGCTCTC TAGCACTCTC AGCACCAATG GGCTCAGACC 181 CTCCCACCGC CTGCTGCTTT TCTTACACCG CGAGGAAGCT TCCTCGCAAC TTTGTGGTAG 241 ATTACTATGA GACCAGCAGC CTCTGCTCCC AGCCAGCTGT GGTATTCCAA ACCAAAAGAG 301 GCAAGCAAGT CTGCGCTGAC CCCAGTGAGT CCTGGGTCCA GGAGTACGTG TATGACCTGG 361 AACTGAACTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 421 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 481 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAAATGGC ATATCACTGC GGAATCATAC 541 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt