Construct: ORF TRCN0000479978
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001500.1_s317c1
- Derived from:
- ccsbBroadEn_10613
- DNA Barcode:
- AGCGGACTCTGTCTGAGAGTGATG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC02370 (338797)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479978
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 338797 | LINC02370 | long intergenic non-protein... | NR_103736.1 | 19.8% | 1_530del;888_1794del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 426
- ORF length:
- 357
- Sequence:
-
1 tcTTCCATTT CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG 61 TTGGCACCAT GACATCCAAC CTGGGCTCTC CTGGCCCCCA GAGAAGAGCT GCCCAGTGCA 121 TGTGCTGGCT GCACCGTGAC GTCCCCTATG AACGAGGCCC ACAGGCAGTG GCTGGCTGGG 181 GGGATGCCCC TGCCCTGAGC TGGAGTCTCC CCAGGTGGCT GCTTCTTCCC CACCCCGAGG 241 GTCACAGCCC AGCCCAAGCT CCAAGGGAAT GGAGCAGCTG CCTGCACCAA GCTTCCCTCC 301 TCTGGAGAAA GCACCTCCTC TTCTCCCTCA CGTGCTCCCT GATGACCGCC AGGCTCCTTG 361 ACATGGTTCC CAGGACCAGC CTCTCCCAGG GTCCCTACTC CCAGTACCCC AGTCCTCACC 421 ATTTGTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 481 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 541 CTTGGCTTTA TATATCTTGT GGAAAGGACG AAGCGGACTC TGTCTGAGAG TGATGACGCG 601 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt