Construct: ORF TRCN0000480093
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018441.1_s317c1
- Derived from:
- ccsbBroadEn_02059
- DNA Barcode:
- TAAGGTGCCCAGCCACACACTGAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STBD1 (8987)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480093
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8987 | STBD1 | starch binding domain 1 | NM_003943.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1140
- ORF length:
- 1074
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg cgccgtctgg tccgccctgc tggttggagg gggtctggcc ggagcacttt 121 tcgtttggct gctgcggggc ggccctggcg acaccgggaa ggacggggat gcggagcagg 181 agaaagacgc ccctcttggg ggagctgcga ttccgggagg ccatcagagt ggcagcagcg 241 gactgagccc tggaccttcc gggcaggagc tggtcaccaa accagagcat cttcaagaaa 301 gcaatggaca tttgatttct aagaccaaag accttggtaa actgcaagca gcatcatgga 361 gattgcagaa tccttccagg gaagtctgtg acaattcaag agaacatgtt ccttctggac 421 agtttccaga cacagaagct ccagctacct ctgagaccag taactctagg agttactctg 481 aagtttcaag aaatgaaagc cttgaatctc ctatgggaga atggggattc caaaaaggac 541 aagagatatc tgctaaagca gctacatgtt ttgcagagaa gttgccttct agcaacctgc 601 tcaagaacag agctaaagaa gaaatgagcc tctctgattt gaacagtcag gaccgggttg 661 accacgagga gtgggaaatg gtgcctaggc actcatcttg gggggatgtt ggtgtgggtg 721 gcagtcttaa ggctccagtg ttaaacctaa accagggaat ggacaatgga agaagcactt 781 tggtggaagc aagaggTCAG CAAGTGCATG GGAAAATGGA AAGGGTAGCA GTGATGCCTG 841 CAGGGTCTCA GCAAGTTAGT GTCAGGTTCC AGGTCCATTA TGTCACAAGC ACTGATGTGC 901 AATTCATTGC AGTAACTGGA GACCATGAGT GTCTTGGGAG ATGGAACACT TACATCCCAC 961 TCCACTATAA CAAGGATGGG TTCTGGTCTC ATTCCATTTT CCTGCCTGCA GATACAGTGG 1021 TGGAGTGGAA GTTTGTGTTG GTAGAGAATG GGGGAGTTAC CCGCTGGGAA GAATGCAGCA 1081 ATAGATTCCT AGAAACTGGC CATGAGGATA AAGTGGTTCA CGCATGGTGG GGGATTCACT 1141 GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 1201 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGCATTTCG ATTTCTTGGC 1261 TTTATATATC TTGTGGAAAG GACGATAAGG TGCCCAGCCA CACACTGATA CGCGTTAAGT 1321 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt