Construct: ORF TRCN0000480110
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001234.1_s317c1
- Derived from:
- ccsbBroadEn_10614
- DNA Barcode:
- GCTCGCCCGCTCGGCTTAGGCTCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WHAMMP3 (339005)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480110
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 123720 | WHAMM | WASP homolog associated wit... | XM_017021923.2 | 23.6% | 21.6% | (many diffs) |
| 2 | human | 123720 | WHAMM | WASP homolog associated wit... | XM_011521232.3 | 23.5% | 22.5% | (many diffs) |
| 3 | human | 100288615 | WHAMMP1 | WAS protein homolog associa... | NR_036650.1 | 22.9% | (many diffs) | |
| 4 | human | 123720 | WHAMM | WASP homolog associated wit... | XM_005272422.3 | 20.7% | 18.9% | (many diffs) |
| 5 | human | 123720 | WHAMM | WASP homolog associated wit... | XM_005272423.4 | 20.7% | 18.9% | (many diffs) |
| 6 | human | 123720 | WHAMM | WASP homolog associated wit... | XR_001751089.2 | 20.3% | (many diffs) | |
| 7 | human | 123720 | WHAMM | WASP homolog associated wit... | XM_005272421.4 | 20.1% | 18.4% | (many diffs) |
| 8 | human | 123720 | WHAMM | WASP homolog associated wit... | XR_001751090.2 | 20.1% | (many diffs) | |
| 9 | human | 123720 | WHAMM | WASP homolog associated wit... | NM_001080435.3 | 14.8% | 13.5% | (many diffs) |
| 10 | human | 339005 | WHAMMP3 | WAS protein homolog associa... | NR_003521.1 | 10.8% | 1_1017del;1408_3589del | |
| 11 | human | 440253 | WHAMMP2 | WAS protein homolog associa... | NR_026589.1 | 7.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 459
- ORF length:
- 390
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 tgggcaccat ggaagcaagt gtgccaaaat ataagaagca cttgcctcaa ctaggaatgc 121 agaaagaaat ggaacaggat gtgaagagat ttggccaggc tgcctgggcc acagcaattc 181 ccaggttgga aaaacttaag ctaatgctag ctcaagagac tcTGCAACTC ATGAGAGCGA 241 AAGAGTTATG TTTAAATCAC AAAAGAGCTG AAATTCAGGG AAAGATGGAA GATCTTCCAG 301 AACAAGAAAA AAATATAAAT GTTGTAGATG AATTAGCAAT ACAATTTTAT GAAATTCAGT 361 TAGAACTATA TGAAGTTAAA TTTGAGATAT TAAAAAACAA AGAAATACTG CTTACTACAC 421 AGTTGGACTC TCTTGAAAGA CTTATAAAAG ATGAAATTTT GCCAACTTTC TTGTACAAAG 481 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 541 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 601 ACGAGCTCGC CCGCTCGGCT TAGGCTCAAC GCGTTAAGTC gacaatcaac ctctggatta 661 caaaatttgt gaaagatt