Construct: ORF TRCN0000480125
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011660.2_s317c1
- Derived from:
- ccsbBroadEn_10565
- DNA Barcode:
- CACTGTACCGTGTTTCCGTCATCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC02085 (152225)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480125
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 152225 | LINC02085 | long intergenic non-protein... | NR_026934.1 | 13.8% | 1_279del;468A>G;565_2051del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 378
- ORF length:
- 285
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGAATAA TAGTTTCAAT AAGGAAGACA 121 GAATGAGTTC TGACACGATG GTTGGGAGCT GTGACAGGCA GACGAAAAAT GGAGCCAAAT 181 GGCATGGAGG TGTGTCATCA CTGCTGGATT TTACCTTGAT CTACATTCAG TTATCTACTT 241 CTTTTCAAAA TGCTGGGCAT TCATTCAAGA AACAGCATAT GTGTTCTGAC TTTGAAGTAA 301 TGGATGAACT GTCATGTGCA GTATATGGAA ATAAGTTTTA TTACCTTCTT CCCACATTAA 361 CTCATCCATC CATTCAATTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 421 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 481 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGACACTGTA CCGTGTTTCC 541 GTCATCAACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt