Construct: ORF TRCN0000480234
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017061.1_s317c1
- Derived from:
- ccsbBroadEn_04021
- DNA Barcode:
- GATTTAAGACGACCCAGCCATTGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DBNDD1 (79007)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480234
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79007 | DBNDD1 | dysbindin domain containing 1 | NM_024043.3 | 100% | 100% | |
| 2 | human | 79007 | DBNDD1 | dysbindin domain containing 1 | NM_001288708.2 | 88% | 83.7% | (many diffs) |
| 3 | human | 79007 | DBNDD1 | dysbindin domain containing 1 | NM_001042610.3 | 86% | 81.5% | (many diffs) |
| 4 | human | 79007 | DBNDD1 | dysbindin domain containing 1 | NM_001288709.1 | 54.7% | 52.9% | (many diffs) |
| 5 | human | 79007 | DBNDD1 | dysbindin domain containing 1 | NM_001371581.1 | 42.6% | 42.6% | 0_1ins306 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 603
- ORF length:
- 534
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gggagaaacc tggaagaata tttgctcaac tgtgaggcat ggttggtggc 121 taagggatca cagaatggca ggcctgccta ttcctcctga gatcgttaag gaggctgagg 181 tgccgcaggc tgcgctgggc gtcccagccc aggggacagg ggacaatggc cacacgcctg 241 tggaggagga ggtcgggggc atcccagtac cagcaccggg gctcctgcag gtcacggaga 301 ggaggCAGCC TCTGAGCAGC GTCTCCTCTC TGGAGGTCCA CTTCGACCTC CTGGACCTCA 361 CTGAGCTCAC CGACATGTCG GACCAGGAGC TGGCCGAGGT CTTTGCTGAC TCGGACGACG 421 AGAACCTCAA CACCGAGTCC CCAGCAGGTC TGCACCCGCT GCCCCGGGCC GGCTACCTGC 481 GCTCCCCTTC CTGGACGAGG ACAAGGGCTG AGCAGAGCCA CGAGAAGCAG CCCCTAGGCG 541 ACCCCGAGCG GCAGGCCACA GTCCTGGACA CGTTTCTCAC TGTGGAGAGG CCCCAGGAGG 601 ACTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 661 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 721 GGCTTTATAT ATCTTGTGGA AAGGACGAGA TTTAAGACGA CCCAGCCATT GGACGCGTTA 781 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt