Construct: ORF TRCN0000480360
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003997.1_s317c1
- Derived from:
- ccsbBroadEn_04663
- DNA Barcode:
- TCTACCCGTGACTGTCAGCGGGAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLAMF6 (114836)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480360
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114836 | SLAMF6 | SLAM family member 6 | NM_001184714.2 | 100% | 100% | |
| 2 | human | 114836 | SLAMF6 | SLAM family member 6 | NM_052931.5 | 99.6% | 99.6% | 795_796insGCA |
| 3 | human | 114836 | SLAMF6 | SLAM family member 6 | XM_017000215.2 | 95.6% | 94.3% | (many diffs) |
| 4 | human | 114836 | SLAMF6 | SLAM family member 6 | XM_017000216.1 | 85.2% | 85.2% | 47_48ins147 |
| 5 | human | 114836 | SLAMF6 | SLAM family member 6 | NM_001184715.2 | 84.9% | 84.9% | 47_48ins147;648_649insGCA |
| 6 | human | 114836 | SLAMF6 | SLAM family member 6 | NM_001184716.2 | 66.5% | 66.5% | 49_50ins333 |
| 7 | human | 114836 | SLAMF6 | SLAM family member 6 | XM_017000217.1 | 66.2% | 66.2% | 49_50ins333;462_463insGCA |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1065
- ORF length:
- 996
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gttgtggctg ttccaatcgc tcctgtttgt cttctgcttt ggcccaggga 121 atgtagtttc acaaagcagc ttaaccccat tgatggtgaa cgggattctg ggggagtcag 181 taactcttcc cctggagttt cctgcaggag agaaggtcaa cttcatcact tggcttttca 241 atgaaacatc tcttgccttc atagtacccc atgaaaccaa aagtccagaa atccacgtga 301 ctaatccgaa acagggaaag cgactgaact tcacccagtc ctactccctg caactcagca 361 acctgaagat ggaagacaca ggctcttaca gagcccagat atccacaaag acctctgcaa 421 agctgtccag ttacactctg aggatattaa gacaactgag gaacatacaa gttaccaatc 481 acagtcagct atttcagaat atgacctgtg agctccatct gacttgctct gtggaggatg 541 cagatgacaa tgtctcattc agatgggagg ccttgggaaa cacactttca agtcagccaa 601 acctcactgt ctcctgggac cccaggattt ccagtgaaca ggactacacc tgcatagcag 661 agaatgctgt cagtaattta tccTTCTCTG TCTCTGCCCA GAAGCTTTGC GAAGATGTTA 721 AAATTCAATA TACAGATACC AAAATGATTC TGTTTATGGT TTCTGGGATA TGCATAGTCT 781 TCGGTTTCAT CATACTGCTG TTACTTGTTT TGAGGAAAAG AAGAGATTCC CTATCTTTGT 841 CTACTCAGCG AACACAGGGC CCCGCAGAGT CCGCAAGGAA CCTAGAGTAT GTTTCAGTGT 901 CTCCAACGAA CAACACTGTG TATGCTTCAG TCACTCATTC AAACAGGGAA ACAGAAATCT 961 GGACACCTAG AGAAAATGAT ACTATCACAA TTTACTCCAC AATTAATCAT TCCAAAGAGA 1021 GTAAACCCAC TTTTTCCAGG GCAACTGCCC TTGACAATGT CGTGTTGCCA ACTTTCTTGT 1081 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1141 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1201 GAAAGGACGA TCTACCCGTG ACTGTCAGCG GGACACGCGT TAAGTCgaca atcaacctct 1261 ggattacaaa atttgtgaaa gatt