Construct: ORF TRCN0000480551
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014292.1_s317c1
- Derived from:
- ccsbBroadEn_10611
- DNA Barcode:
- CCCATGTGCCTACTCTCTTGGTCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00326 (285735)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480551
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285735 | LINC00326 | long intergenic non-protein... | NR_026969.1 | 24.1% | 1_645del;943_1230del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 366
- ORF length:
- 297
- Sequence:
-
1 tcttccattt CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG 61 TTGGCACCAT GTGCTCAGTA AGAATCAGAA TGTTCAATTG TGTGAAGGTG GGAGATGGGA 121 AGATTGGTAT TATGGCCTGG ATCCAGAAAT CAGTCTTCCA CTATAGGAAA TGGGAATTTA 181 AAGATGATCA GAAGACAGTT GGGAGCAGAG TGAGAATAAG AACCCTCAAC TGCTGTCTCA 241 CCTTTCAGAT CACGAAGAAG TTTTTTACAA TGAGCAGAAC ACTCAACCTG AAAGCAGAAT 301 GGATTGAGTC ACTGCAGCGT GGCAGTGGAA TGGTGTTTGA TGTTGGCAAA GGAAACATGT 361 ACTTCTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 421 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 481 CTTGGCTTTA TATATCTTGT GGAAAGGACG ACCCATGTGC CTACTCTCTT GGTCCACGCG 541 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt