Construct: ORF TRCN0000480699
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010432.1_s317c1
- Derived from:
- ccsbBroadEn_04993
- DNA Barcode:
- CTTGTTCGTCGTGTTAGGATCGTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC42 (146849)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480699
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 146849 | CCDC42 | coiled-coil domain containi... | NM_001158261.2 | 100% | 100% | |
| 2 | human | 146849 | CCDC42 | coiled-coil domain containi... | NM_144681.3 | 76.5% | 76.5% | 492_713del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 792
- ORF length:
- 726
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag tctgggcatc atggaagagg aagacctggc cgagtacttc cggctgcagt 121 atggggagcg gctgctgcag atgctccaga aactccccaa tgttgagggg gcgtcggagt 181 ccccatccat ctggctactg gagaagaaaa aggagacaga aatcatgcat caaactatgg 241 tgcagaagaa gaagatgttt cagcgcagaa tggaaaccct gaacctgcgc tgggaggaac 301 tgggcgttaa ggaagcccaa ctgaaggctc acatccagaa gtcTGAGCAG TTCATCCAGG 361 AGAACGACCA GAAACGGATC CGCGCCATGA AGAAAGCCAA CAAGGAGCGA GAACTCAAGT 421 GCCAGCACAT GCAGGAGCTG ACCAAGCGCA AGCAGGAGAT GGTGGCGCTG CGGCTGGAGC 481 ACCAGCGGCT GAGCGCCAAG CTGAAGGACT ACTACATCTT CAACAAGTAC CTAGAGAAGG 541 TGGTGGAGAA CTCCGAGGAA TCTCGCTGGG CGCACATCCA GAACACCGCA GCCAAGAAGA 601 CCCTCCTGCT TGGCACCATT AAGATGGCCA CGCTGAACCT CTTCCAGATC GTGAGCAAGC 661 ACCTGAAGGA GGTGACTGAG GTGGCACTGG AGGACACCCA CAAGCAGCTG GACATGATCC 721 AGCAATTTAT CCAAGACCGG TCGGACATCT GGGCAGAGGT GAAAAAGAAG GAACAACAGC 781 GAGTCCGGAT TTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 841 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 901 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACTT GTTCGTCGTG TTAGGATCGT 961 TACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t