Construct: ORF TRCN0000481189
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015910.1_s317c1
- Derived from:
- ccsbBroadEn_12552
- DNA Barcode:
- GGCCCCTGCGCCCTTCGCCATCTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FA2H (79152)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481189
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79152 | FA2H | fatty acid 2-hydroxylase | XM_011523319.2 | 39.9% | 38% | (many diffs) |
| 2 | human | 79152 | FA2H | fatty acid 2-hydroxylase | NM_024306.5 | 31.3% | 29.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 444
- ORF length:
- 354
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGCCCAAGCC TCTCCATCTG CAGGCACCCT 121 TCGACGGCTC CCGCCTGGTC TTCCCCCCTG TGCCAGCCTC CCTGGTGATC GGCGTCTTCT 181 ACTTGTGCAT GCAGCTCATC CTGCCTGAGG CAGTAGGGGG CACTGTGTTT GCGGGGGGCC 241 TCCTGGGCTA CGTCCTCTAT GACATGACCC ATTACTACCT GCACTTTGGC TCGCCGCACA 301 AGGGCTCCTA CCTGTACAGC CTGAAGGCCC ACCACGTCAA GCACCACTTT GCACATCAGA 361 AGTCAGGATT TGGTATCAGC ACTAAATTGT GGGATTACTG TTTCCACACC CTCACTCCAG 421 AGAAACCCCA CCTGAAGACG CAGTGTCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 481 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 541 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAG GCCCCTGCGC 601 CCTTCGCCAT CTTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 661 att