Construct: ORF TRCN0000481614
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013664.1_s317c1
- Derived from:
- ccsbBroadEn_13595
- DNA Barcode:
- TTTGCGCTAACAGTCATTGGGCGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZC3H12D (340152)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481614
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 340152 | ZC3H12D | zinc finger CCCH-type conta... | NM_207360.3 | 43% | 43% | 682_1581del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 750
- ORF length:
- 681
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagcacccc agcaagatgg aattcttcca gaagctgggc tatgaccggg 121 aggatgtgct ccgggtgttg ggcaagctgg gcgagggcgc cctggtcaac gacgtgctgc 181 aggagcttat ccgcacgggc agccgcccgg gtgccctgga gcacccggct gcacccaggc 241 tagtgcctcg gggctcctgt ggggtcccgg acTCTGCCCA GCGTGGCCCG GGGACAGCCC 301 TGGAAGAGGA CTTCAGAACC CTGGCCAGTT CTCTGCGACC CATAGTGATT GATGGCAGCA 361 ACGTGGCGAT GAGCCATGGA AATAAAGAAA CCTTCTCTTG CCGGGGAATC AAGCTGGCTG 421 TTGACTGGTT CAGGGACAGA GGACACACCT ACATCAAAGT TTTTGTTCCA TCCTGGAGGA 481 AGGACCCACC AAGAGCTGAC ACCCCTATCA GAGAGCAGCA CGTGCTGGCG GAGCTGGAGC 541 GGCAGGCGGT GCTGGTGTAC ACGCCGTCCC GCAAGGTGCA CGGCAAGCGC CTGGTCTGCT 601 ACGACGACCG CTACATCGTG AAGGTGGCCT ACGAGCAGGA CGGCGTCATC GTCTCCAACG 661 ACAACTACCG GGACCTGCAG AGCGAGAACC CCGAGTGGAA GTGGTTCATC GAGCAGAGGC 721 TGCTCATGTT CTCCTTCGTC AACGACCGGT TGCCAACTTT CTTGTACAAA GTGGTTGATA 781 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 841 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATTTGC 901 GCTAACAGTC ATTGGGCGAA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 961 tgaaagatt