Construct: ORF TRCN0000487739
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019681.1_s317c1
- DNA Barcode:
- TTGGTTGTGCCAAGACCTAGAACC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TSSK2 (23617)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000487739
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23617 | TSSK2 | testis specific serine kina... | NM_053006.5 | 99.8% | 99.4% | 911G>A;1074_1075insG |
| 2 | mouse | 22115 | Tssk2 | testis-specific serine kina... | NM_009436.2 | 89.5% | 91.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1152
- ORF length:
- 1077
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatggac gatgccacag tcctaaggaa gaagggttac atcgtaggca 121 tcaatcttgg caagggttcc tacgcaaaag tcaaatctgc ctactctgag cgcctcaagt 181 tcaatgtggc tgtcaagatc atcgaccgca agaaaacacc tactgacttt gtggagagat 241 tccttcctcg ggagatggac atcctggcaa ctgtcaacca cggctccatc atcaagactt 301 acgagatctt tgagacctct gacggacgga tctacatcat catggagctt ggcgtccagg 361 gcgacctcct cgagttcatc aagtgccagg gagccctgca tgaggacgtg gcacgcaaga 421 tgttccgaca gctctcctcc gccgtcaagt actgccacga cctggacatc gtccaccggg 481 acctcaagtg cgagaacctt ctcctcgaca aggacttcaa catcaagctg tctgactttg 541 gcttctccaa gcgctgcctg cgggacagca atgggcgcat catcctcagc aagaccttct 601 gcgggtcggc agcatatgca gcccccgagg tgctgcagag catcccctac cagcccaagg 661 tgtatgacat ctggagcctg ggcgtgatcc tgtacatcat ggtctgcggc tccatgccct 721 atgacgactc cgacatcagg aagatgctgc gtatccagaa ggagcaccgt gtggacttcc 781 cgcgctccaa gaacctgacc tgcgagtgca aggacctcat ctaccgcatg ctgcagcccg 841 acgtcagcca gcggctccac atcgatgaga tccTCAGCCA CTCGTGGCTG CAGCCCCCCA 901 AGCCCAAAGC CACGTCTTCT GCCTCCTTCA AGAGGGAGGG GGAGGGCAAG TACCGCGCTG 961 AGTGCAAACT GGACACCAAG ACAGACTTGA GGCCCGACCA CCGGCCCGAC CACAAGCTTG 1021 GAGCCAAAAC CCAGCACCGG CTGCTGGTGG TGCCCGAGAA CGAGAACAGG ATGGAGGACA 1081 GGCTGGCCGA GACCTCCAGG GCCAAAGACC ATCACATCTC CGGAGCTGAG GTGGGGAAAG 1141 CAAGCACCGA CCCAGCTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1201 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1261 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGATTGGTT GTGCCAAGAC CTAGAACCAC 1321 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt