Construct: ORF TRCN0000487837

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021329.1_s317c1
DNA Barcode:
TTGTGCCTTCGATCTCTTATCGAA
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
APOC2 (344)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000487837
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 344 APOC2 apolipoprotein C2 NM_000483.5 83.1% 83.1% 253_303del
2 human 100533990 APOC4-APOC2 APOC4-APOC2 readthrough (NM... NR_037932.1 13.7% 1_1207del;1460_1829del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
321
ORF length:
252
Sequence:
1tcttccattt CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG
61CAGGCACCAT GGGCACACGA CTCCTCCCAG CTCTGTTTCT TGTCCTCCTG GTATTGGGAT
121TTGAGGTCCA GGGGACCCAA CAGCCCCAGC AAGATGAGAT GCCTAGCCCG ACCTTCCTCA
181CCCAGGTGAA GGAATCTCTC TCCAGTTACT GGGAGTCAGC AAAGACAGCC GCCCAGAACC
241TGTACGAGAA GACATACCTG CCCGCTGTAG ATGAGAAACT CAGGGACTTG TACAGCAAAA
301GCACAGCAGC CATGAGCACT TAGAACCCAG CTTTCTTGTA CAAAGTGGTT GATATCGGTA
361AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
421TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT TGTGCCTTCG
481ATCTCTTATC GAAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
541att

Download FASTA (ORF) (Full)

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