Construct: ORF TRCN0000487877
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021755.1_s317c1
- DNA Barcode:
- CCGGCCGGTGCATCAGAGTATGTA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- SIRT1 (23411)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000487877
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23411 | SIRT1 | sirtuin 1 | NM_012238.5 | 99.9% | 100% | 1440A>G |
| 2 | human | 23411 | SIRT1 | sirtuin 1 | NM_001142498.1 | 60.4% | 60.5% | 0_1ins885;555A>G |
| 3 | human | 23411 | SIRT1 | sirtuin 1 | NM_001314049.1 | 59.1% | 57.6% | (many diffs) |
| 4 | mouse | 93759 | Sirt1 | sirtuin 1 | NM_019812.3 | 84.6% | 85.5% | (many diffs) |
| 5 | mouse | 93759 | Sirt1 | sirtuin 1 | NM_001159589.2 | 81.2% | 81.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2310
- ORF length:
- 2241
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcaccat ggcggacgag gcggccctcg cccttcagcc cggcggctcc ccctcggcgg 121 cgggggccga cagggaggcc gcgtcgtccc ccgccgggga gccgctccgc aagaggccgc 181 ggagagatgg tcccggcctc gagcggagcc cgggcgagcc cggtggggcg gccccagagc 241 gtgaggtgcc ggcggcggcc aggggctgcc cgggtgcggc ggcggcggcg ctgtggcggg 301 aggcggaggc agaggcggcg gcggcaggcg gggagcaaga ggcccaggcg actgcggcgg 361 ctggggaagg agacaatggg ccgggcctgc agggcccatc tcgggagcca ccgctggccg 421 acaacttgta cgacgaagac gacgacgacg agggcgagga ggaggaagag gcggcggcgg 481 cggcgattgg gtaccgagat aaccttctgt tcggtgatga aattatcact aatggttttc 541 attcctgtga aagtgatgag gaggatagag cctcacatgc aagctctagt gactggactc 601 caaggccacg gataggtcca tatacttttg ttcagcaaca tcttatgatt ggcacagatc 661 ctcgaacaat tcttaaagat ttattgccgg aaacaatacc tccacctgag ttggatgata 721 tgacactgtg gcagattgtt attaatatcc tttcagaacc accaaaaagg aaaaaaagaa 781 aagatattaa tacaattgaa gatgctgtga aattactgca agagtgcaaa aaaattatag 841 ttctaactgg agctggggtg tctgtttcat gtggaatacc tgacttcagg tcaagggatg 901 gtatttatgc tcgccttgct gtagacttcc cagatcttcc agatcctcaa gcgatgtttg 961 atattgaata tttcagaaaa gatccaagac cattcttcaa gtttgcaaag gaaatatatc 1021 ctggacaatt ccagccatct ctctgtcaca aattcatagc cttgtcagat aaggaaggaa 1081 aactacttcg caactatacc cagaacatag acacgctgga acaggttgcg ggaatccaaa 1141 ggataattca gtgtcatggt tcctttgcaa cagcatcttg cctgatttgt aaatacaaag 1201 ttgactgtga agctgtacga ggagatattt ttaatcaggt agttcctcga tgtcctaggt 1261 gcccagctga tgaaccgctt gctatcatga aaccagagat tgtgtttttt ggtgaaaatt 1321 taccagaaca gtttcataga gccatgaagt atgacaaaga tgaagttgac ctcctcattg 1381 ttattgggtc ttccctcaaa gtaagaccag tagcactaat tccaagttcc ataccccatg 1441 aagtgcctca gatattaatt aatagagaac ctttgcctca tctgcatttt gatgtagagc 1501 ttcttgggga ctgtgatgtc ataattaatg aattgtgtca taggttaggt ggtgaatatg 1561 ccaaactttg ctgtaaccct gtaaagcttt cagaaattac tgaaaaacct ccacgaacac 1621 aaaaagaatt ggcttatttg tcagagttgc cacccacacc tcttcatgtt tcagaagact 1681 caagttcacc agaaagaact tcaccaccag attcttcagt gattgtcaca cttttagacc 1741 aagcagctaa gagtaatgat gatttagatg tgtctgaatc aaaaggttgt atggaagaaa 1801 aaccacagga agtacaaact tctaggaatg ttgaaagtat tgctgaacag atggaaaatc 1861 cggatttgaa gaatgttggt tctagtactg gggagaaaaa tgaaagaact tcagtggctg 1921 gaacagtgag aaaatgctgg cctaatagag tggcaaagga gcagattagt aggcggcttg 1981 atggtaatca gtatctgttt ttgccaccaa atcgttacat tttccatGGC GCTGAGGTAT 2041 ATTCAGACTC TGAAGATGAC GTCTTATCCT CTAGTTCTTG TGGCAGTAAC AGTGATAGTG 2101 GGACATGCCA GAGTCCAAGT TTAGAAGAAC CCATGGAGGA TGAAAGTGAA ATTGAAGAAT 2161 TCTACAATGG CTTAGAAGAT GAGCCTGATG TTCCAGAGAG AGCTGGAGGA GCTGGATTTG 2221 GGACTGATGG AGATGATCAA GAGGCAATTA ATGAAGCTAT ATCTGTGAAA CAGGAAGTAA 2281 CAGACATGAA CTATCCATCA AACAAATCAT AGGACCCAGC TTTCTTGTAC AAAGTGGTTG 2341 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 2401 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGACC 2461 GGCCGGTGCA TCAGAGTATG TAACGCGTTA AGTCgacaat caacctctgg attacaaaat 2521 ttgtgaaaga tt