Construct: ORF TRCN0000488004
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019587.1_s317c1
- DNA Barcode:
- GGGCTATTAACATAGCAGCGTGAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AURKC (6795)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488004
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6795 | AURKC | aurora kinase C | NM_003160.3 | 99.8% | 99.6% | 825_826insG |
| 2 | human | 6795 | AURKC | aurora kinase C | NM_001015879.2 | 94.7% | 94.5% | 1_45del;870_871insG |
| 3 | human | 6795 | AURKC | aurora kinase C | NM_001015878.2 | 88.9% | 88.7% | 1_102del;927_928insG |
| 4 | human | 6795 | AURKC | aurora kinase C | XR_430209.3 | 41.2% | 1_1034del;1367_1371delGGTGA;1865_2000delinsG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 894
- ORF length:
- 828
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaagaat 61 tcaccatgcg gcgcctcaca gtcgatgact ttgaaatcgg gcgtcccctg ggcaagggga 121 aatttgggaa tgtgtacctg gctcggctca aggaaagcca tttcattgtg gccctgaagg 181 ttctcttcaa gtcgcagata gagaaggaag gactggagca ccagctgcgc cgggaaattg 241 agatccaggc tcatctacaa caccccaata tcctgcgcct gtataactat ttccatgatg 301 cacgccgggt gtacctgatt ctggaatatg ctccaagggg tgagctctac aaggagctgc 361 agaaaagcga gaaattagat gaacagcgca cagccacgat aatagaggag ttggcagatg 421 ccctgaccta ctgccatgac aagaaagtga ttcacagaga tattaagcca gagaacctgc 481 tgctggggtt caggggtgag gtgaagattg cagattttgg ctggtctgtg cacaccccct 541 cccTGAGGAG GAAGACAATG TGTGGGACAC TGGACTACTT GCCGCCAGAA ATGATTGAGG 601 GGAGAACATA TGATGAAAAG GTGGATTTGT GGTGCATTGG AGTGCTCTGC TATGAGCTGC 661 TGGTGGGATA TCCACCCTTT GAGAGCGCCT CCCACAGTGA GACTTACAGA CGCATCCTCA 721 AGGTAGATGT GAGGTTTCCA CTATCAATGC CTCTGGGGGC CCGGGACTTG ATTTCCAGGC 781 TTCTCAGATA CCAGCCCTTG GAGAGACTGC CCCTGGCCCA GATCCTGAAG CACCCCTGGG 841 TTCAGGCCCA CTCCCGAAGG GTGCTGCCTC CCTGTGCTCA GATGGCTTCC GACCCAGCTT 901 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 961 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 1021 CTTGTGGAAA GGACGAGGGC TATTAACATA GCAGCGTGAC ACGCGTTAAG TCgacaatca 1081 acctctggat tacaaaattt gtgaaagatt