Construct: ORF TRCN0000488340
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021987.1_s317c1
- DNA Barcode:
- GTATCACCAATAGTGCACCCGACG
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- VIM (7431)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488340
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7431 | VIM | vimentin | NM_003380.5 | 100% | 100% | |
| 2 | human | 7431 | VIM | vimentin | XM_006717500.2 | 100% | 100% | |
| 3 | mouse | 22352 | Vim | vimentin | NM_011701.4 | 91.7% | 97.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1467
- ORF length:
- 1398
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcaccat gtccaccagg tccgtgtcct cgtcctccta ccgcaggatg ttcggcggcc 121 cgggcaccgc gagccggccg agctccagcc ggagctacgt gactacgtcc acccgcacct 181 acagcctggg cagcgcgctg cgccccagca ccagccgcag cctctacgcc tcgtccccgg 241 gcggcgtgta tgccacgcgc tcctctgccg tgcgcctgcg gagcagcgtg cccggggtgc 301 ggctcctgca ggactcggtg gacttctcgc tggccgacgc catcaacacc gagttcaaga 361 acacccgcac caacgagaag gtggagctgc aggagctgaa tgaccgcttc gccaactaca 421 tcgacaaggt gcgcttcctg gagcagcaga ataagatcct gctggccgag ctcgagcagc 481 tcaagggcca aggcaagtcg cgcctggggg acctctacga ggaggagatg cgggagctgc 541 gccggcaggt ggaccagcta accaacgaca aagcccgcgt cgaggtggag cgcgacaacc 601 tggccgagga catcatgcgc ctccgggaga aattgcagga ggagatgctt cagagagagg 661 aagccgaaaa caccctgcaa tctttcagac aggatgttga caatgcgtct ctggcacgtc 721 ttgaccttga acgcaaagtg gaatctttgc aagaagagat tgcctttttg aagaaactcc 781 acgaagagga aatccaggag ctgcaggctc agattcagga acagcatgtc caaatcgatg 841 tggatgtttc caagcctgac ctcacggctg ccctgcgtga cgtacgtcag caatatgaaa 901 gtgtggctgc caagaacctg caggaggcag aagaatggta caaatccaag tttgctgacc 961 tctctgaggc tgccaaccgg aacaatgacg ccctgcgcca ggcaaagcag gagtccactg 1021 agtaccggag acaggtgcag tccctcacct gtgaagtgga tgcccttaaa ggaaccaatg 1081 agtccctgga acgccagatg cgtgaaatgg aagagaactt tgccgttgaa gctgctaact 1141 accaagacac tattggccgc cTGCAGGATG AGATTCAGAA TATGAAGGAG GAAATGGCTC 1201 GTCACCTTCG TGAATACCAA GACCTGCTCA ATGTTAAGAT GGCCCTTGAC ATTGAGATTG 1261 CCACCTACAG GAAGCTGCTG GAAGGCGAGG AGAGCAGGAT TTCTCTGCCT CTTCCAAACT 1321 TTTCCTCCCT GAACCTGAGG GAAACTAATC TGGATTCACT CCCTCTGGTT GATACCCACT 1381 CAAAAAGGAC ACTTCTGATT AAGACGGTTG AAACTAGAGA TGGACAGGTT ATCAACGAAA 1441 CTTCTCAGCA TCACGATGAC CTTGAATAGA ACCCAGCTTT CTTGTACAAA GTGGTTGATA 1501 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 1561 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGTATC 1621 ACCAATAGTG CACCCGACGA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 1681 tgaaagatt