Construct: ORF TRCN0000488366

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019624.1_s317c1
DNA Barcode:
GCCGCGACAGAGCGTAGCCCATAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCR5 (1234)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488366
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1234 CCR5 C-C motif chemokine recepto... NM_000579.3 99.9% 99.7% 1056_1057insG
2 human 1234 CCR5 C-C motif chemokine recepto... NM_001100168.1 99.9% 99.7% 1056_1057insG
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
75
ORF end:
1134
ORF length:
1059
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcgc caccatggat tatcaagtgt caagtccaat ctatgacatc aattattata
121catcggagcc ctgccaaaaa atcaatgtga agcaaatcgc agcccgcctc ctgcctccgc
181tctactcact ggtgttcatc tttggttttg tgggcaacat gctggtcatc ctcatcctga
241taaactgcaa aaggctgaag agcatgactg acatctacct gctcaacctg gccatctctg
301acctgttttt ccttcttact gtccccttct gggctcacta tgctgccgcc cagtgggact
361ttggaaatac aatgtgtcaa ctcttgacag ggctctattt tataggcttc ttctctggaa
421tcttcttcat catcctcctg acaatcgata ggtacctggc tgtcgtccat gctgtgtttg
481ctttaaaagc caggacggtc acctttgggg tggtgacaag tgtgatcact tgggtggtgg
541ctgtgtttgc gtctctccca ggaatcatct ttaccagatc tcaaaaagaa ggtcttcatt
601acacctgcag ctctcatttt ccatacagtc agtatcaatt ctggaagaat ttccagacat
661taaagatagt catcttgggg ctggtcctgc cgctgcttgt catggtcatc tgctactcgg
721gaatcctaaa aactctgctt cggtgtcgaa atgagaagaa gaggcacagg gctgtgaggc
781ttatcttcac catcatgatt GTTTATTTTC TCTTCTGGGC TCCCTACAAC ATTGTCCTTC
841TCCTGAACAC CTTCCAGGAA TTCTTTGGCC TGAATAATTG CAGTAGCTCT AACAGGTTGG
901ACCAAGCTAT GCAGGTGACA GAGACTCTTG GGATGACGCA CTGCTGCATC AACCCCATCA
961TCTATGCCTT TGTCGGGGAG AAGTTCAGAA ACTACCTCTT AGTCTTCTTC CAAAAGCACA
1021TTGCCAAACG CTTCTGCAAA TGCTGTTCTA TTTTCCAGCA AGAGGCTCCC GAGCGAGCAA
1081GCTCAGTTTA CACCCGATCC ACTGGGGAGC AGGAAATATC TGTGGGCTTG GACCCAGCTT
1141TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1201CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1261CTTGTGGAAA GGACGAGCCG CGACAGAGCG TAGCCCATAA ACGCGTTAAG TCgacaatca
1321acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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