Construct: ORF TRCN0000488404
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021200.1_s317c1
- DNA Barcode:
- AAATTCTTTTTACCTCTCCACCAC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- ADGRD2 (347088)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488404
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 347088 | ADGRD2 | adhesion G protein-coupled ... | XM_006717348.3 | 80.9% | 98.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 2961
- ORF length:
- 2889
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggacgcc ccctggggag ccggcgaaag atggctgcat ggcgccgctg 121 tggacagatc cggcgtgtca ctgggccctc cacccacccc tcaggtcaac cagggcacac 181 tgggcccaca ggtcgcacct gtcgccgcag gcgaggtggt caaaacagcc ggcggagtgt 241 gcaagttcag cggccagcgg ctgagctggt ggcaggctca ggaaagctgc gagcagcagt 301 tcggccacct ggccctgcag cctccagatg gcgtgctcgc cagcagactg agggaccctg 361 tgtgggtcgg acagagagag gcccccctga gaaggcctcc ccagcggaga gccagaacca 421 ccgccgtgct ggtgttcgac gagcggaccg ccgacagagc cgccagactg agaagccctc 481 tgcctgagct ggccgccctg accgcctgta cccacgtgca gtgggactgc gcttcccctg 541 atcctgccgc cctgttttct gtggctgccc ctgccctgcc caacgccctg cagctgagag 601 cctttgccga gcctggcgga gtcgtcagag ccgctctggt cgtcagagga cagcatgccc 661 cctttctggc cgcctttcgg gccgatggcc ggtggcatca cgtgtgcgcc acatgggagc 721 agaggggcgg cagatgggcc ctgtttagcg acggcagacg gcgggctggc gccagaggac 781 tgggagctgg acaccctgtg ccctctggcg gcattctcgt gctgggccag gaccaggata 841 gcctgggcgg aggctttagc gtccggcacg ccctgagcgg caacctgacc gacttccacc 901 tgtgggctcg cgccctgagc cctgcccagc tgcacagagc cagagcctgt gcccctccta 961 gcgagggcct gctgttccgc tgggaccctg gcgccctgga cgtgacccct agcctgctgc 1021 ctaccgtgtg ggtccgactg ctgtgccccg tgcccagcga ggaatgcccc acctggaacc 1081 ctggccccag aagcgagggc agcgagctgt gcctggaacc ccagcccttc ctgtgctgct 1141 accggaccga gccctacaga cggctgcagg atgcccagtc ttggcctgga caggacgtga 1201 tcagcagagt gaacgccctg gccaacgaca tcgtgctgct gcccgacccc ctgtctgaag 1261 tgcacggcgc cctgtctcca gccgaggcca gctctttcct gggcctgctg gaacatgtgc 1321 tggccatgga aatggccccc ctgggacctg ccgcactgct ggccgtcgtg cggttcctga 1381 agagagtggt cgctctgggc gcaggcgatc ctgaactgct gctgacaggc ccctgggagc 1441 agctgagcca gggcgtggtg tctgtggcct ctctggtgct ggaagaacag gtggccgaca 1501 cctggctgtc tctgcgggaa gtgatcggcg gacctatggc cctggtggcc agcgtgcaga 1561 gactggcccc tctgctgagc accagcatga ccagcgagcg gcccagaatg cggatccagc 1621 acagacacgc cggcctgagc ggcgtgaccg tgatccacag ctggttcacc agccgggtgt 1681 tccagcacac cctggaaggc cccgatctgg aacctcaggc tccagccagc agcgaagagg 1741 ccaaccgggt gcagagattc ctgagcaccc aggtcggaag cgccatcatc agctccgaag 1801 tgtgggacgt gaccggcgaa gtgaacgtgg ccatgacatt ccatctgcag caccgggccc 1861 agagccccct gtttcctcca caccccccca gcccatacac aggcggagcc tgggctacca 1921 ctggctgtag cgtcgccgct ctgtacctgg acagcaccgc ctgtttctgc aaccacagca 1981 ccagcttcgc catcctgctg cagatctacg aggtgcagag aggccctgag gaagagagcc 2041 tgctgcggac cctgagcttc gtgggctgcg gcgtgtcctt ctgcgccctg acaaccacct 2101 tcctgctgtt tctggtggcc ggggtgccca agagcgagag aaccaccgtg cacaagaacc 2161 tgaccttcag cctggccagc gccgagggct tcctgatgac ctctgagtgg gccaaggcca 2221 acgaggtggc ctgtgtggcc gtgaccgtgg ctatgcactt cctgttcctc gtggccttca 2281 gctggatgct ggtggaaggc ctgctgctgt ggcggaaggt ggtggccgtg tccatgcacc 2341 ccggacccgg catgagactg taccacgcca caggatgggg cgtgccagtg ggcatcgtgg 2401 ctgtgaccct ggccatgctg ccccacgatt acgtggcccc aggccactgc tggctgaacg 2461 tgcacaccaa cgccatctgg gccttcgtgg gccccgtgct gttcgtgctg accgccaata 2521 cctgcatcct ggcccgggtg gtcatgatca ccgtgtccag cgctcgccgg agagcccgga 2581 tgctgagccc tcagccttgc ctgcagcagc agatctggac acagatttgg gccaccgtga 2641 agcctgtgct ggtccTGCTG CCCGTGCTGG GACTGACATG GCTGGCCGGA ATTCTGGTGC 2701 ACCTGAGTCC AGCCTGGGCC TATGCCGCCG TGGGCCTGAA TAGCATCCAG GGCCTGTACA 2761 TCTTCCTGGT GTACGCCGCC TGCAACGAGG AAGTGCGGAG CGCCCTGCAG AGAATGGCCG 2821 AGAAGAAAGT CGCCGAGGTG CTGAGGGCTC TGGGAGTGTG GGGCGGAGCC GCCAAAGAGC 2881 ACAGCCTGCC CTTCAGCGTG CTGCCCCTGT TCCTGCCTCC CAAGCCCAGC ACCCCCAGAC 2941 ACCCTCTGAA GGCTCCCGCC TGAGACCCAG CTTTCTTGTA CAAAGTGGTT GATATCGGTA 3001 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 3061 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA AATTCTTTTT 3121 ACCTCTCCAC CACACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 3181 att