Construct: ORF TRCN0000488655
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019534.1_s317c1
- DNA Barcode:
- CCGTATTAAACTATAGCCATACAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- S1PR4 (8698)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488655
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8698 | S1PR4 | sphingosine-1-phosphate rec... | NM_003775.4 | 99.9% | 99.7% | 1152_1153insG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 63
- ORF end:
- 1218
- ORF length:
- 1155
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaagcca 61 ccatgaacgc cacggggacc ccggtggccc ccgagtcctg ccaacagctg gcggccggcg 121 ggcacagccg gctcattgtt ctgcactaca accactcggg ccggctggcc gggcgcgggg 181 ggccggagga tggcggcctg ggggccctgc gggggctgtc ggtggccgcc agctgcctgg 241 tggtgctgga gaacttgctg gtgctggcgg ccatcaccag ccacatgcgg tcgcgacgct 301 gggtctacta ttgcctggtg aacatcacgc tgagtgacct gctcacgggc gcggcctacc 361 tggccaacgt gctgctgtcg ggggcccgca ccttccgtct ggcgcccgcc cagtggttcc 421 tacgggaggg cctgctcttc accgccctgg ccgcctccac cttcagcctg ctcttcactg 481 caggggagcg ctttgccacc atggtgcggc cggtggccga gagcggggcc accaagacca 541 gccgcgtcta cggcttcatc ggcctctgct ggctgctggc cgcgctgctg gggatgctgc 601 ctttgctggg ctggaactgc ctgtgcgcct ttgaccgctg ctccagcctt ctgcccctct 661 actccaagcg ctacatcctc ttctgcctgg tgatcttcgc cggcgtcctg gccaccatca 721 tgggcctcta tggggccatc ttccgcctgg tgcaggccag cgggcagaag gccccacgcc 781 cagcggcccg ccgcaaggcc cgccgcctgc tgaagacggt gctgatgatc ctgctggcct 841 tcctggtgtg ctggggccca ctcttcgggc tgctgctggc cgacgtcttt ggctccaacc 901 tctgggccca ggagtaccTG CGGGGCATGG ACTGGATCCT GGCCCTGGCC GTCCTCAACT 961 CGGCGGTCAA CCCCATCATC TACTCCTTCC GCAGCAGGGA GGTGTGCAGA GCCGTGCTCA 1021 GCTTCCTCTG CTGCGGGTGT CTCCGGCTGG GCATGCGAGG GCCCGGGGAC TGCCTGGCCC 1081 GGGCCGTCGA GGCTCACTCC GGAGCTTCCA CCACCGACAG CTCTCTGAGG CCAAGGGACA 1141 GCTTTCGCGG CTCCCGCTCG CTCAGCTTTC GGATGCGGGA GCCCCTGTCC AGCATCTCCA 1201 GCGTGCGGAG CATCGACCCA GCTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 1261 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 1321 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CCGTATTAAA CTATAGCCAT 1381 ACAGACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt