Construct: ORF TRCN0000488721

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020254.1_s317c1
DNA Barcode:
ATCTAGTCCTCGCAGCTGTTGCTT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
DDR1 (780)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488721
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 780 DDR1 discoidin domain receptor t... NM_001297652.1 99.9% 100% 585C>T
2 human 780 DDR1 discoidin domain receptor t... NM_001297653.1 99.9% 100% 585C>T
3 human 780 DDR1 discoidin domain receptor t... NM_001954.4 99.9% 100% 585C>T
4 human 780 DDR1 discoidin domain receptor t... XM_017011269.2 99.2% 99.3% 585C>T;1883_1900del
5 human 780 DDR1 discoidin domain receptor t... NM_001202523.1 97.9% 97.9% 1_54del;639C>T
6 human 780 DDR1 discoidin domain receptor t... XM_011514888.3 97.2% 97.3% 1_54del;639C>T;1937_1954del
7 human 780 DDR1 discoidin domain receptor t... NM_001297654.1 95.9% 95.9% 585C>T;1513_1623del
8 human 780 DDR1 discoidin domain receptor t... NM_013993.2 95.9% 95.9% 585C>T;1513_1623del
9 human 780 DDR1 discoidin domain receptor t... NM_013994.2 95.2% 95.3% 585C>T;1513_1623del;1994_2011del
10 human 780 DDR1 discoidin domain receptor t... XM_011514883.2 95.2% 95.3% 585C>T;1513_1623del;1994_2011del
11 human 780 DDR1 discoidin domain receptor t... XM_011514884.1 95.2% 95.3% 585C>T;1513_1623del;1994_2011del
12 human 780 DDR1 discoidin domain receptor t... XM_011514885.2 95.2% 95.3% 585C>T;1513_1623del;1994_2011del
13 human 780 DDR1 discoidin domain receptor t... XM_011514886.2 95.2% 95.3% 585C>T;1513_1623del;1994_2011del
14 human 780 DDR1 discoidin domain receptor t... XM_011514887.2 95.2% 95.3% 585C>T;1513_1623del;1994_2011del
15 human 780 DDR1 discoidin domain receptor t... XM_017011268.2 95.2% 95.3% 585C>T;1513_1623del;1994_2011del
16 human 780 DDR1 discoidin domain receptor t... XM_024446540.1 95.2% 95.3% 585C>T;1513_1623del;1994_2011del
17 human 780 DDR1 discoidin domain receptor t... XM_024446541.1 95.2% 95.3% 585C>T;1513_1623del;1994_2011del
18 human 780 DDR1 discoidin domain receptor t... XM_024446542.1 95.2% 95.3% 585C>T;1513_1623del;1994_2011del
19 human 780 DDR1 discoidin domain receptor t... XM_006715185.2 94% 94% 1_54del;639C>T;1567_1677del
20 human 780 DDR1 discoidin domain receptor t... XM_011514882.2 93.4% 93.4% (many diffs)
21 human 780 DDR1 discoidin domain receptor t... NM_001202522.1 87.5% 85.8% 585C>T;1345_1346ins82;1430_1431ins245
22 human 780 DDR1 discoidin domain receptor t... NM_001202521.1 57.6% 57.8% (many diffs)
23 mouse 12305 Ddr1 discoidin domain receptor f... NM_172962.1 87% 93.1% (many diffs)
24 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523538.3 87% 93.1% (many diffs)
25 mouse 12305 Ddr1 discoidin domain receptor f... NM_001198831.1 83.5% 89.3% (many diffs)
26 mouse 12305 Ddr1 discoidin domain receptor f... NM_001198833.1 83.5% 89.3% (many diffs)
27 mouse 12305 Ddr1 discoidin domain receptor f... NM_007584.2 83.5% 89.3% (many diffs)
28 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523533.1 83.5% 89.3% (many diffs)
29 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523534.1 83.5% 89.3% (many diffs)
30 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523535.3 83.5% 89.3% (many diffs)
31 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523536.3 83.5% 89.3% (many diffs)
32 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523537.1 83.5% 89.3% (many diffs)
33 mouse 12305 Ddr1 discoidin domain receptor f... XM_011246259.1 83.5% 89.3% (many diffs)
34 mouse 12305 Ddr1 discoidin domain receptor f... XR_001782030.1 59% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
2700
ORF length:
2628
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catgggacca gaggccctgt catctttact gctgctgctc ttggtggcaa
121gtggagatgc tgacatgaag ggacattttg atcctgccaa gtgccgctat gccctgggca
181tgcaggaccg gaccatccca gacagtgaca tctctgcttc cagctcctgg tcagattcca
241ctgccgcccg ccacagcagg ttggagagca gtgacgggga tggggcctgg tgccccgcag
301ggtcggtgtt tcccaaggag gaggagtact tgcaggtgga tctacaacga ctgcacctgg
361tggctctggt gggcacccag ggacggcatg ccgggggcct gggcaaggag ttctcccgga
421gctaccggct gcgttactcc cgggatggtc gccgctggat gggctggaag gaccgctggg
481gtcaggaggt gatctcaggc aatgaggacc ctgagggagt ggtgctgaag gaccttgggc
541cccccatggt tgcccgactg gttcgcttct acccccgggc tgaccgggtc atgagcgtct
601gtctgcgggt agagctctat ggctgcctct ggagggatgg actcctgtct tacactgccc
661ctgtggggca gacaatgtat ttatctgagg ccgtgtacct caacgactcc acctatgacg
721gacataccgt gggcggactg cagtatgggg gtctgggcca gctggcagat ggtgtggtgg
781ggctggatga ctttaggaag agtcaggagc tgcgggtctg gccaggctat gactatgtgg
841gatggagcaa ccacagcttc tccagtggct atgtggagat ggagtttgag tttgaccggc
901tgagggcctt ccaggctatg caggtccact gtaacaacat gcacacgctg ggagcccgtc
961tgcctggcgg ggtggaatgt cgcttccggc gtggccctgc catggcctgg gagggggagc
1021ccatgcgcca caacctaggg ggcaacctgg gggaccccag agcccgggct gtctcagtgc
1081cccttggcgg ccgtgtggct cgctttctgc agtgccgctt cctctttgcg gggccctggt
1141tactcttcag cgaaatctcc ttcatctctg atgtggtgaa caattcctct ccggcactgg
1201gaggcacctt cccgccagcc ccctggtggc cgcctggccc acctcccacc aacttcagca
1261gcttggagct ggagcccaga ggccagcagc ccgtggccaa ggccgagggg agcccgaccg
1321ccatcctcat cggctgcctg gtggccatca tcctgctcct gctgctcatc attgccctca
1381tgctctggcg gctgcactgg cgcaggctcc tcagcaaggc tgaacggagg gtgttggaag
1441aggagctgac ggttcacctc tctgtccctg gggacactat cctcatcaac aaccgcccag
1501gtcctagaga gccacccccg taccaggagc cccggcctcg tgggaatccg ccccactccg
1561ctccctgtgt ccccaatggc tctgcctaca gtggggacta tatggagcct gagaagccag
1621gcgccccgct tctgccccca cctccccaga acagcgtccc ccattatgcc gaggctgaca
1681ttgttaccct gcagggcgtc accgggggca acacctatgc tgtgcctgca ctgcccccag
1741gggcagtcgg ggatgggccc cccagagtgg atttccctcg atctcgactc cgcttcaagg
1801agaagcttgg cgagggccag tttggggagg tgcacctgtg tgaggtcgac agccctcaag
1861atctggttag tcttgatttc ccccttaatg tgcgtaaggg acaccctttg ctggtagctg
1921tcaagatctt acggccagat gccaccaaga atgccaggaa tgatttcctg aaagaggtga
1981agatcatgtc gaggctcaag gacccaaaca tcattcggct gctgggcgtg tgtgtgcagg
2041acgaccccct ctgcatgatt actgactaca tggagaacgg cgacctcaac cagttcctca
2101gtgcccacca gctggaggac aaggcagccg agggggcccc tggggacggg caggctgcgc
2161aggggcccac catcagctac ccaatgctgc tgcatgtggc agcccagatc gcctccggca
2221tgcgctatct ggccacactc aactttgtac atcgggacct ggccacgcgg aactgcctag
2281ttggggaaaa tttcaccatc aaaatcgcag actttGGCAT GAGCCGGAAC CTCTATGCTG
2341GGGACTATTA CCGTGTGCAG GGCCGGGCAG TGCTGCCCAT CCGCTGGATG GCCTGGGAGT
2401GCATCCTCAT GGGGAAGTTC ACGACTGCGA GTGACGTGTG GGCCTTTGGT GTGACCCTGT
2461GGGAGGTGCT GATGCTCTGT AGGGCCCAGC CCTTTGGGCA GCTCACCGAC GAGCAGGTCA
2521TCGAGAACGC GGGGGAGTTC TTCCGGGACC AGGGCCGGCA GGTGTACCTG TCCCGGCCGC
2581CTGCCTGCCC GCAGGGCCTA TATGAGCTGA TGCTTCGGTG CTGGAGCCGG GAGTCTGAGC
2641AGCGACCACC CTTTTCCCAG CTGCATCGGT TCCTGGCAGA GGATGCACTC AACACGGTGT
2701GAGACCCAGC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
2761TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
2821GGCTTTATAT ATCTTGTGGA AAGGACGAAT CTAGTCCTCG CAGCTGTTGC TTACGCGTTA
2881AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)