Construct: ORF TRCN0000489012

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019196.1_s317c1
DNA Barcode:
ACCTTGTCTTGTCCTCTTGACGAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ROM1 (6094)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489012
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6094 ROM1 retinal outer segment membr... NM_000327.3 99.8% 100% 669G>C;676C>T
2 mouse 19881 Rom1 rod outer segment membrane ... NM_009073.4 85.1% 84.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
75
ORF end:
1128
ORF length:
1053
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcgc caccatggcg ccggtgttgc ccctggtgct gcccctgcag ccccgcatcc
121gcctggcaca agggctctgg ctcctctcct ggctgctggc gctggctggt ggcgtcatcc
181tcctctgtag tgggcacctc ctggtccagc taaggcacct tggcaccttc ctggctccct
241cctgtcagtt ccctgtcctg ccccaggctg ccctggcagc gggcgcggtg gctctgggca
301caggactagt gggtgtagga gccagccggg caagtctgaa tgcagctcta taccctccct
361ggcgaggggt cctgggcccg ctgctggtgg ctggcacggc tggtgggggg gggctcctgg
421tcgtcgccct cgggctagcc ctggctttgc ctgggagtct ggatgaggcg ctggaggagg
481gcctggtgac tgccttggct cactacaagg acacagaggt gcctgggcac tgtcaggcca
541aaaggctggt ggatgagctg caactgaggt accactgctg cgggcgccac gggtacaagg
601attggtttgg ggtccagtgg gtcagcagcc gttacctgga tcccggtgac cgggatgtgg
661ctgaccggat ccagagcaat gtagaaggcc tatacctgac tgatggggtc cctttctcct
721gttgcaaccc ccactcaccc cgcccttgct tgcaaaaccg tctttcagac tcctacgccc
781acccccTGTT CGATCCCCGA CAACCCAACC AAAACCTCTG GGCCCAAGGG TGCCATGAGG
841TGCTGCTGGA GCACTTGCAG GACTTGGCAG GCACACTGGG TAGCATGCTG GCTGTCACCT
901TCCTACTGCA GGCTCTGGTG CTCCTTGGCC TGCGGTACCT GCAAACAGCA CTGGAGGGGC
961TTGGAGGGGT CATTGATGCG GGAGGAGAGA CCCAGGGCTA TCTCTTTCCC AGTGGGCTGA
1021AAGATATGCT GAAAACAGCA TGGCTACAGG GAGGGGTTGC CTGCAGGCCA GCACCTGAGG
1081AGGCCCCACC AGGAGAAGCA CCTCCCAAGG AGGATCTATC TGAGGCCGAC CCAGCTTTCT
1141TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1201CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1261GTGGAAAGGA CGAACCTTGT CTTGTCCTCT TGACGAGACG CGTTAAGTCg acaatcaacc
1321tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)

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