Construct: ORF TRCN0000489149
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020968.1_s317c1
- DNA Barcode:
- GCTCCCTGGATGATAATTGTCTTA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- S1PR4 (8698)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489149
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8698 | S1PR4 | sphingosine-1-phosphate rec... | NM_003775.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1224
- ORF length:
- 1152
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgaacgcc acggggaccc cggtggcccc cgagtcctgc caacagctgg 121 cggccggcgg gcacagccgg ctcattgttc tgcactacaa ccactcgggc cggctggccg 181 ggcgcggggg gccggaggat ggcggcctgg gggccctgcg ggggctgtcg gtggccgcca 241 gctgcctggt ggtgctggag aacttgctgg tgctggcggc catcaccagc cacatgcggt 301 cgcgacgctg ggtctactat tgcctggtga acatcacgct gagtgacctg ctcacgggcg 361 cggcctacct ggccaacgtg ctgctgtcgg gggcccgcac cttccgtctg gcgcccgccc 421 agtggttcct acgggagggc ctgctcttca ccgccctggc cgcctccacc ttcagcctgc 481 tcttcactgc aggggagcgc tttgccacca tggtgcggcc ggtggccgag agcggggcca 541 ccaagaccag ccgcgtctac ggcttcatcg gcctctgctg gctgctggcc gcgctgctgg 601 ggatgctgcc tttgctgggc tggaactgcc tgtgcgcctt tgaccgctgc tccagccttc 661 tgcccctcta ctccaagcgc tacatcctct tctgcctggt gatcttcgcc ggcgtcctgg 721 ccaccatcat gggcctctat ggggccatct tccgcctggt gcaggccagc gggcagaagg 781 ccccacgccc agcggcccgc cgcaaggccc gccgcctgct gaagacggtg ctgatgatcc 841 tgctggcctt cctggtgtgc tggggcccac tcTTCGGGCT GCTGCTGGCC GACGTCTTTG 901 GCTCCAACCT CTGGGCCCAG GAGTACCTGC GGGGCATGGA CTGGATCCTG GCCCTGGCCG 961 TCCTCAACTC GGCGGTCAAC CCCATCATCT ACTCCTTCCG CAGCAGGGAG GTGTGCAGAG 1021 CCGTGCTCAG CTTCCTCTGC TGCGGGTGTC TCCGGCTGGG CATGCGAGGG CCCGGGGACT 1081 GCCTGGCCCG GGCCGTCGAG GCTCACTCCG GAGCTTCCAC CACCGACAGC TCTCTGAGGC 1141 CAAGGGACAG CTTTCGCGGC TCCCGCTCGC TCAGCTTTCG GATGCGGGAG CCCCTGTCCA 1201 GCATCTCCAG CGTGCGGAGC ATCTAGGACC CAGCTTTCTT GTACAAAGTG GTTGATATCG 1261 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1321 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAGCTCCCTG 1381 GATGATAATT GTCTTAACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1441 aagatt