Construct: ORF TRCN0000489223

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020348.1_s317c1
DNA Barcode:
TCAATCTATTCAAACCTGCCGTTG
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
ACVRL1 (94)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489223
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 94 ACVRL1 activin A receptor like type 1 NM_000020.3 100% 100%
2 human 94 ACVRL1 activin A receptor like type 1 NM_001077401.2 100% 100%
3 human 94 ACVRL1 activin A receptor like type 1 XM_005269235.2 100% 100%
4 human 94 ACVRL1 activin A receptor like type 1 XM_011539008.1 77.1% 77.1% 1_42del;353_354ins312
5 human 94 ACVRL1 activin A receptor like type 1 XM_024449279.1 47.7% 47.7% 0_1ins789
6 mouse 11482 Acvrl1 activin A receptor, type II... NM_001277257.1 85% 88.4% (many diffs)
7 mouse 11482 Acvrl1 activin A receptor, type II... NM_001277258.1 85% 88.4% (many diffs)
8 mouse 11482 Acvrl1 activin A receptor, type II... NM_001277259.1 85% 88.4% (many diffs)
9 mouse 11482 Acvrl1 activin A receptor, type II... NM_009612.3 85% 88.4% (many diffs)
10 mouse 11482 Acvrl1 activin A receptor, type II... NM_001277255.1 82.5% 85.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1581
ORF length:
1509
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catgaccttg ggctccccca ggaaaggcct tctgatgctg ctgatggcct
121tggtgaccca gggagaccct gtgaagccgt ctcggggccc gctggtgacc tgcacgtgtg
181agagcccaca ttgcaagggg cctacctgcc ggggggcctg gtgcacagta gtgctggtgc
241gggaggaggg gaggcacccc caggaacatc ggggctgcgg gaacttgcac agggagctct
301gcagggggcg ccccaccgag ttcgtcaacc actactgctg cgacagccac ctctgcaacc
361acaacgtgtc cctggtgctg gaggccaccc aacctccttc ggagcagccg ggaacagatg
421gccagctggc cctgatcctg ggccccgtgc tggccttgct ggccctggtg gccctgggtg
481tcctgggcct gtggcatgtc cgacggaggc aggagaagca gcgtggcctg cacagcgagc
541tgggagagtc cagtctcatc ctgaaagcat ctgagcaggg cgacagcatg ttgggggacc
601tcctggacag tgactgcacc acagggagtg gctcagggct ccccttcctg gtgcagagga
661cagtggcacg gcaggttgcc ttggtggagt gtgtgggaaa aggccgctat ggcgaagtgt
721ggcggggctt gtggcacggt gagagtgtgg ccgtcaagat cttctcctcg agggatgaac
781agtcctggtt ccgggagact gagatctata acacagtgtt gctcagacac gacaacatcc
841taggcttcat cgcctcagac atgacctccc gcaactcgag cacgcagctg tggctcatca
901cgcactacca cgagcacggc tccctctacg actttctgca gagacagacg ctggagcccc
961atctggctct gaggctagct gtgtccgcgg catgcggcct ggcgcacctg cacgtggaga
1021tcttcggtac acagggcaaa ccagccattg cccaccgcga cttcaagagc cgcaatgtgc
1081tggtcaagag caacctgcag tgttgcatcg ccgacctggg cctggctgtg atgcactcac
1141agggcagcga ttacctggac atcggcaaca acccgagagt gggcaccaag cggtacatgg
1201cacccgaggt gctggacgag cagatccgca cggactgctt tgagtcctac aagtggactg
1261acatctgggC CTTTGGCCTG GTGCTGTGGG AGATTGCCCG CCGGACCATC GTGAATGGCA
1321TCGTGGAGGA CTATAGACCA CCCTTCTATG ATGTGGTGCC CAATGACCCC AGCTTTGAGG
1381ACATGAAGAA GGTGGTGTGT GTGGATCAGC AGACCCCCAC CATCCCTAAC CGGCTGGCTG
1441CAGACCCGGT CCTCTCAGGC CTAGCTCAGA TGATGCGGGA GTGCTGGTAC CCAAACCCCT
1501CTGCCCGACT CACCGCGCTG CGGATCAAGA AGACACTACA AAAAATTAGC AACAGTCCAG
1561AGAAGCCTAA AGTGATTCAA TGAGACCCAG CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1621AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1681TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT CAATCTATTC
1741AAACCTGCCG TTGACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1801att

Download FASTA (ORF) (Full)

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