Construct: ORF TRCN0000489357
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021181.1_s317c1
- DNA Barcode:
- TAGTGCTTTACTGGTACCAATAAC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- TAAR2 (9287)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489357
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9287 | TAAR2 | trace amine associated rece... | NM_001033080.1 | 100% | 100% | |
| 2 | human | 9287 | TAAR2 | trace amine associated rece... | NM_014626.3 | 87.1% | 87.1% | 0_1ins135 |
| 3 | mouse | 209512 | Taar2 | trace amine-associated rece... | NM_001007266.1 | 81.8% | 84.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1125
- ORF length:
- 1053
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggctgtc tcatcagagc aacatgaact ttcacatttc aaaagaacac 121 agacaaaaaa ggaaaaattc aattgctctg aatatggaaa tagatcttgc ccagaaaatg 181 aaagatctct gggtgtccga gtggctatgt attcatttat ggcaggatcc atattcatca 241 caatatttgg caatcttgcc atgataattt ccatttccta cttcaagcag cttcacacac 301 caaccaactt cctcatcctc tccatggcca tcactgattt cctcctggga ttcaccatca 361 tgccatatag tatgatcaga tcggtggaga actgctggta ttttgggctt acattttgca 421 agatttatta tagttttgac ctgatgctta gcataacatc catttttcat ctttgctcag 481 tggccattga tagattttat gctatatgtt acccattact ttattccacc aaaataacta 541 ttccagtcat taaaagattg ctacttctat gttggtcggt ccctggagca tttgccttcg 601 gggtggtctt ctcagaggcc tatgcagatg gaatagaggg ctatgacatc ttggttgctt 661 gttccagttc ctgcccagtg atgttcaaca agctatgggg gaccaccttg tttatggcag 721 gtttcttcac tcctGGGTCT ATGATGGTGG GGATTTATGG CAAAATTTTT GCAGTATCCA 781 GAAAACATGC TCATGCCATC AATAACTTGC GAGAAAATCA AAATAATCAA GTGAAGAAAG 841 ACAAAAAAGC TGCCAAAACT TTAGGAATAG TGATAGGAGT TTTCTTATTA TGTTGGTTTC 901 CTTGTTTCTT CACAATTTTA TTGGATCCCT TTTTGAACTT CTCTACTCCT GTAGTTTTGT 961 TTGATGCCTT GACATGGTTT GGCTATTTTA ACTCCACATG TAATCCGTTA ATATATGGTT 1021 TCTTCTATCC CTGGTTTCGC AGAGCACTGA AGTACATTTT GCTAGGTAAA ATTTTCAGCT 1081 CATGTTTCCA TAATACTATT TTGTGTATGC AAAAAGAAAG TGAGTAAGAC CCAGCTTTCT 1141 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 1201 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 1261 GTGGAAAGGA CGATAGTGCT TTACTGGTAC CAATAACACG CGTTAAGTCg acaatcaacc 1321 tctggattac aaaatttgtg aaagatt