Construct: ORF TRCN0000489390
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020947.1_s317c1
- DNA Barcode:
- AAGCTCTTTGCGCCTCAAACCCAG
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CCR5 (1234)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489390
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1234 | CCR5 | C-C motif chemokine recepto... | NM_000579.3 | 100% | 100% | |
| 2 | human | 1234 | CCR5 | C-C motif chemokine recepto... | NM_001100168.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1128
- ORF length:
- 1056
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggattat caagtgtcaa gtccaatcta tgacatcaat tattatacat 121 cggagccctg ccaaaaaatc aatgtgaagc aaatcgcagc ccgcctcctg cctccgctct 181 actcactggt gttcatcttt ggttttgtgg gcaacatgct ggtcatcctc atcctgataa 241 actgcaaaag gctgaagagc atgactgaca tctacctgct caacctggcc atctctgacc 301 tgtttttcct tcttactgtc cccttctggg ctcactatgc tgccgcccag tgggactttg 361 gaaatacaat gtgtcaactc ttgacagggc tctattttat aggcttcttc tctggaatct 421 tcttcatcat cctcctgaca atcgataggt acctggctgt cgtccatgct gtgtttgctt 481 taaaagccag gacggtcacc tttggggtgg tgacaagtgt gatcacttgg gtggtggctg 541 tgtttgcgtc tctcccagga atcatcttta ccagatctca aaaagaaggt cttcattaca 601 cctgcagctc tcattttcca tacagtcagt atcaattctg gaagaatttc cagacattaa 661 agatagtcat cttggggctg gtcctgccgc tgcttgtcat ggtcatctgc tactcgggaa 721 TCCTAAAAAC TCTGCTTCGG TGTCGAAATG AGAAGAAGAG GCACAGGGCT GTGAGGCTTA 781 TCTTCACCAT CATGATTGTT TATTTTCTCT TCTGGGCTCC CTACAACATT GTCCTTCTCC 841 TGAACACCTT CCAGGAATTC TTTGGCCTGA ATAATTGCAG TAGCTCTAAC AGGTTGGACC 901 AAGCTATGCA GGTGACAGAG ACTCTTGGGA TGACGCACTG CTGCATCAAC CCCATCATCT 961 ATGCCTTTGT CGGGGAGAAG TTCAGAAACT ACCTCTTAGT CTTCTTCCAA AAGCACATTG 1021 CCAAACGCTT CTGCAAATGC TGTTCTATTT TCCAGCAAGA GGCTCCCGAG CGAGCAAGCT 1081 CAGTTTACAC CCGATCCACT GGGGAGCAGG AAATATCTGT GGGCTTGTAG AACCCAGCTT 1141 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 1201 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 1261 CTTGTGGAAA GGACGAAAGC TCTTTGCGCC TCAAACCCAG ACGCGTTAAG TCgacaatca 1321 acctctggat tacaaaattt gtgaaagatt