Construct: ORF TRCN0000489578
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020263.1_s317c1
- DNA Barcode:
- GCATGGATTGACATTACGTGCCGT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CLK2 (1196)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489578
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1196 | CLK2 | CDC like kinase 2 | NM_003993.4 | 27.9% | 26.9% | 400_484del;503_1494del |
| 2 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001294338.2 | 27.8% | 26.8% | 400_487del;506_1497del |
| 3 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001363704.2 | 27.7% | 26.7% | 168_169insAGC;397_481del;500_1491del |
| 4 | human | 1196 | CLK2 | CDC like kinase 2 | XM_011509143.2 | 27.6% | 26.6% | 168_169insAGC;397_484del;503_1494del |
| 5 | mouse | 12748 | Clk2 | CDC-like kinase 2 | NM_007712.4 | 24.3% | 25.2% | (many diffs) |
| 6 | mouse | 12748 | Clk2 | CDC-like kinase 2 | NM_001163432.2 | 24.1% | 25% | (many diffs) |
| 7 | mouse | 105943584 | Gm45927 | predicted gene, 45927 | NM_001310016.1 | 15.8% | 16.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 489
- ORF length:
- 417
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgccgcat cctcgaaggt accactcctc agagcgaggc agccggggga 121 gttaccgtga acactatcGG AGCCGAAAGC ATAAGCGACG AAGAAGTCGC TCCTGGTCAA 181 GTAGTAGTGA CCGGACACGA CGGCGTCGGC GAGAGGACAG CTACCATGTC CGTTCTCGAA 241 GCAGTTATGA TGATCGTTCG TCCGACCGGA GGGTGTATGA CCGGCGATAC TGTGGCAGCT 301 ACAGACGCAA CGATTATAGC CGGGATCGGG GAGATGCCTA CTATGACACA GACTATCGGC 361 ATTCCTATGA ATATCAGCGG GAGAACAGCA GTTACCGCAG CCAGCGCAGC AGCCGGAGGA 421 AGCACAGACG GCGGAGGAGG CGCAGCCGGA CATTTAGCCG CTCATCTTCG ATGAAATCGT 481 TAGCACCTTG AGACCCAGCT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 541 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 601 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAGCA TGGATTGACA TTACGTGCCG 661 TACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t