Construct: ORF TRCN0000489595
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021784.1_s317c1
- DNA Barcode:
- AGCGCGTCCCCTCATTAGGTACTC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- C16orf58 (64755)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489595
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64755 | C16orf58 | chromosome 16 open reading ... | NM_022744.4 | 99.9% | 99.7% | 554A>G |
| 2 | human | 64755 | C16orf58 | chromosome 16 open reading ... | XM_017023570.1 | 52.3% | 52.3% | 0_1ins669 |
| 3 | human | 64755 | C16orf58 | chromosome 16 open reading ... | XR_950831.3 | 48.3% | (many diffs) | |
| 4 | mouse | 233913 | BC017158 | cDNA sequence BC017158 | XM_011241783.1 | 59.8% | 58.1% | (many diffs) |
| 5 | mouse | 233913 | BC017158 | cDNA sequence BC017158 | XM_011241784.2 | 53.3% | 51.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1473
- ORF length:
- 1404
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcaccat ggctgacgac gcgggtttgg agaccccgct gtgttccgag cagttcggct 121 ccggggaggc acggggctgc cgcgccgccg cggacgggag cctgcagtgg gaggtcgggg 181 gctggcgctg gtgggggctc tccagggcct tcacggtcaa acctgaagga cgagatgcgg 241 gcgaagtggg ggcttccggg gccccctcac cgcccctctc cgggctccag gccgtgttcc 301 tgcctcaggg cttccctgat agcgtcagcc cggactactt gccctaccag ctgtgggatt 361 ccgtgcaggc gtttgcttcc agcctctccg gctccctagc cacccaggca gtcttgctgg 421 gcataggggt ggggaacgca aaagccactg tttcagctgc cacggccacc tggctcgtga 481 aagattcaac tggcatgctg ggccgcatcg tctttgcctg gtggaaaggg agcaaactgg 541 actgcaatgc caagcagtgg aggctttttg cggacatcct caatgacgta gccatgttcc 601 ttgagattat ggctcctgta tgcccaatct gtttcaccat gaccgtctcc accagcaacc 661 tagccaagtg catcgtgagt gttgctggtg gggccactcg ggctgccctg accgtgcacc 721 aggctcggag gaacaacatg gctgacgtgt cagccaagga cagcagccag gagacgctgg 781 tgaacctggc ggggctcttg gtcagcctcc tgatgctccc tctggtgtca ggttgccctg 841 gcttcagcct tggatgtttc ttcttcctca ctgccctcca catctacgcc aactaccgcg 901 cggtccgagc cctggtcatg gagaccttga acgaaggccg gctccggctg gtcctgaagc 961 actaccttca gaggggagag gtactcgacc caactgcagc caatcgcatg gagccgctgt 1021 ggacaggttt ctggccagct ccgtctctat ccctgggggt ccccttacac cgcttggtct 1081 ccagtgtctt tgagctgcag cagctggttg aggggcacca agaatcctac ctcctcTGCT 1141 GGGACCAGTC ACAAAACCAG GTACAGGTAG TTCTGAACCA GAAGGCAGGC CCCAAGACCA 1201 TCCTAAGGGC CGCCACACAT GGGCTGATGC TTGGGGCCCT GCAGGGAGAT GGACCCCTTC 1261 CAGCAGAGCT GGAGGAGCTG AGGAACCGGG TGCGGGCAGG TCCTAAGAAA GAGAGCTGGG 1321 TCGTCGTCAA GGAGACACAC GAAGTGTTGG ACATGCTGTT CCCAAAGTTC TTGAAAGGAC 1381 TGCAGGATGC CGGCTGGAAG ACCGAGAAGC ACCAGCTAGA GGTGGATGAG TGGAGGGCCA 1441 CATGGCTTCT GTCTCCCGAA AAGAAGGTCT TGTAGAACCC AGCTTTCTTG TACAAAGTGG 1501 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 1561 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 1621 AAGCGCGTCC CCTCATTAGG TACTCACGCG TTAAGTCgac aatcaacctc tggattacaa 1681 aatttgtgaa agatt