Construct: ORF TRCN0000489633

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021955.1_s317c1
DNA Barcode:
CGACCATCTGCTACTTCTGCCCTC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
KIT (3815)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489633
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3815 KIT KIT proto-oncogene, recepto... NM_000222.2:c.1676T>A 99.9% 99.8% 1961T>C;2290C>T
2 human 3815 KIT KIT proto-oncogene, recepto... NM_000222.2:c.1961T>C 99.9% 99.8% 1676T>A;2290C>T
3 human 3815 KIT KIT proto-oncogene, recepto... NM_000222.2 99.8% 99.7% 1676T>A;1961T>C;2290C>T
4 human 3815 KIT KIT proto-oncogene, recepto... XM_005265740.1 99.7% 99.6% (many diffs)
5 human 3815 KIT KIT proto-oncogene, recepto... XM_017008178.1 99.7% 99.6% (many diffs)
6 human 3815 KIT KIT proto-oncogene, recepto... XM_005265741.1 99.6% 99.5% (many diffs)
7 human 3815 KIT KIT proto-oncogene, recepto... NM_001093772.1 99.4% 99.3% (many diffs)
8 human 3815 KIT KIT proto-oncogene, recepto... NM_000222.2:c.1673_1687del 99.4% 99.3% 1670_1671insGAAGGATGTTGAGGA;1946T>C;2275C>T
9 human 3815 KIT KIT proto-oncogene, recepto... XM_005265742.3 99.3% 99.2% (many diffs)
10 human 3815 KIT KIT proto-oncogene, recepto... XM_017008180.1 99.3% 99.2% (many diffs)
11 human 3815 KIT KIT proto-oncogene, recepto... XM_017008179.1 99.2% 99.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2997
ORF length:
2928
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gagaggcgct cgcggcgcct gggattttct ctgcgttctg ctcctactgc
121ttcgcgtcca gacaggctct tctcaaccat ctgtgagtcc aggggaaccg tctccaccat
181ccatccatcc aggaaaatca gacttaatag tccgcgtggg cgacgagatt aggctgttat
241gcactgatcc gggctttgtc aaatggactt ttgagatcct ggatgaaacg aatgagaata
301agcagaatga atggatcacg gaaaaggcag aagccaccaa caccggcaaa tacacgtgca
361ccaacaaaca cggcttaagc aattccattt atgtgtttgt tagagatcct gccaagcttt
421tccttgttga ccgctccttg tatgggaaag aagacaacga cacgctggtc cgctgtcctc
481tcacagaccc agaagtgacc aattattccc tcaaggggtg ccaggggaag cctcttccca
541aggacttgag gtttattcct gaccccaagg cgggcatcat gatcaaaagt gtgaaacgcg
601cctaccatcg gctctgtctg cattgttctg tggaccagga gggcaagtca gtgctgtcgg
661aaaaattcat cctgaaagtg aggccagcct tcaaagctgt gcctgttgtg tctgtgtcca
721aagcaagcta tcttcttagg gaaggggaag aattcacagt gacgtgcaca ataaaagatg
781tgtctagttc tgtgtactca acgtggaaaa gagaaaacag tcagactaaa ctacaggaga
841aatataatag ctggcatcac ggtgacttca attatgaacg tcaggcaacg ttgactatca
901gttcagcgag agttaatgat tctggagtgt tcatgtgtta tgccaataat acttttggat
961cagcaaatgt cacaacaacc ttggaagtag tagataaagg attcattaat atcttcccca
1021tgataaacac tacagtattt gtaaacgatg gagaaaatgt agatttgatt gttgaatatg
1081aagcattccc caaacctgaa caccagcagt ggatctatat gaacagaacc ttcactgata
1141aatgggaaga ttatcccaag tctgagaatg aaagtaatat cagatacgta agtgaacttc
1201atctaacgag attaaaaggc accgaaggag gcacttacac attcctagtg tccaattctg
1261acgtcaatgc tgccatagca tttaatgttt atgtgaatac aaaaccagaa atcctgactt
1321acgacaggct cgtgaatggc atgctccaat gtgtggcagc aggattccca gagcccacaa
1381tagattggta tttttgtcca ggaactgagc agagatgctc tgcttctgta ctgccagtgg
1441atgtgcagac actaaactca tctgggccac cgtttggaaa gctagtggtt cagagttcta
1501tagattctag tgcattcaag cacaatggca cggttgaatg taaggcttac aacgatgtgg
1561gcaagacttc tgcctatttt aactttgcat ttaaaggtaa caacaaagag caaatccatc
1621cccacaccct gttcactcct ttgctgattg gtttcgtaat cgtagctggc atgatgtgca
1681ttattgtgat gattctgacc tacaaatatt tacagaaacc catgtatgaa gtacagtgga
1741aggatgttga ggagataaat ggaaacaatt atgtttacat agacccaaca caacttcctt
1801atgatcacaa atgggagttt cccagaaaca ggctgagttt tgggaaaacc ctgggtgctg
1861gagctttcgg gaaggttgtt gaggcaactg cttatggctt aattaagtca gatgcggcca
1921tgactgtcgc tgtaaagatg ctcaagccga gtgcccattt gacagaacgg gaagccctca
1981tgtctgaact caaagtcctg agttaccttg gtaatcacat gaatattgcg aatctacttg
2041gagcctgcac cattggaggg cccaccctgg tcattacaga atattgttgc tatggtgatc
2101ttttgaattt tttgagaaga aaacgtgatt catttatttg ttcaaagcag gaagatcatg
2161cagaagctgc actttataag aatcttctgc attcaaagga gtcttcctgc agcgatagta
2221ctaatgagta catggacatg aaacctggag tttcttatgt tgtcccaacc aaggccgaca
2281aaaggagatc tgtgagaata ggctcataca tagaaagaga tgtgactccc gccatcatgg
2341aggatgacga gttggcctta gacttagaag acttgctgag cttttcttac caggtggcaa
2401agggcatggc tttcctcgcc tccaagaatt gtattcacag agacttggca gccagaaata
2461tcctccttac tcatggtcgg atcacaaaga tttgtgattt tggtctagcc agagacatca
2521agaatgattc taattatgtg gttaaaggaa acgctcgact acctgtgaag tggatggcac
2581ctgaaagcat tttcaactgt gtatacacgt ttgaaagtga cgtctggtcc TATGGGATTT
2641TTCTTTGGGA GCTGTTCTCT TTAGGAAGCA GCCCCTATCC TGGAATGCCG GTCGATTCTA
2701AGTTCTACAA GATGATCAAG GAAGGCTTCC GGATGCTCAG CCCTGAACAC GCACCTGCTG
2761AAATGTATGA CATAATGAAG ACTTGCTGGG ATGCAGATCC CCTAAAAAGA CCAACATTCA
2821AGCAAATTGT TCAGCTAATT GAGAAGCAGA TTTCAGAGAG CACCAATCAT ATTTACTCCA
2881ACTTAGCAAA CTGCAGCCCC AACCGACAGA AGCCCGTGGT AGACCATTCT GTGCGGATCA
2941ATTCTGTCGG CAGCACCGCT TCCTCCTCCC AGCCTCTGCT TGTGCACGAC GATGTCTAGA
3001ACCCAGCTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
3061GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
3121TTTATATATC TTGTGGAAAG GACGACGACC ATCTGCTACT TCTGCCCTCA CGCGTTAAGT
3181Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)

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