Construct: ORF TRCN0000489699
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019391.1_s317c1
- DNA Barcode:
- GAAATGTCGACTTATAACTCGCGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TAAR2 (9287)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489699
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9287 | TAAR2 | trace amine associated rece... | NM_014626.3 | 99.8% | 99.6% | 918_919insG |
| 2 | human | 9287 | TAAR2 | trace amine associated rece... | NM_001033080.1 | 87% | 86.9% | 1_135del;1053_1054insG |
| 3 | mouse | 209512 | Taar2 | trace amine-associated rece... | NM_001007266.1 | 77% | 80.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 996
- ORF length:
- 921
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatgtat tcatttatgg caggatccat attcatcaca atatttggca 121 atcttgccat gataatttcc atttcctact tcaagcagct tcacacacca accaacttcc 181 tcatcctctc catggccatc actgatttcc tcctgggatt caccatcatg ccatatagta 241 tgatcagatc ggtggagaac tgctggtatt ttgggcttac attttgcaag atttattata 301 gttttgacct gatgcttagc ataacatcca tttttcatct ttgctcagtg gccattgata 361 gattttatgc tatatgttac ccattacttt attccaccaa aataactatt ccagtcatta 421 aaagattgct acttctatgt tggtcggtcc ctggagcatt tgccttcggg gtggtcttct 481 cagaggccta tgcagatgga atagagggct atgacatctt ggttgcttgt tccagttcct 541 gcccagtgat gttcaacaag ctatggggga ccaccttgtt tatggcaggt ttcttcactc 601 ctgggtctat gatggtgggg atttatggca aaatttttgc agtatccaga aaacatgctc 661 atGCCATCAA TAACTTGCGA GAAAATCAAA ATAATCAAGT GAAGAAAGAC AAAAAAGCTG 721 CCAAAACTTT AGGAATAGTG ATAGGAGTTT TCTTATTATG TTGGTTTCCT TGTTTCTTCA 781 CAATTTTATT GGATCCCTTT TTGAACTTCT CTACTCCTGT AGTTTTGTTT GATGCCTTGA 841 CATGGTTTGG CTATTTTAAC TCCACATGTA ATCCGTTAAT ATATGGTTTC TTCTATCCCT 901 GGTTTCGCAG AGCACTGAAG TACATTTTGC TAGGTAAAAT TTTCAGCTCA TGTTTCCATA 961 ATACTATTTT GTGTATGCAA AAAGAAAGTG AGGACCCAGC TTTCTTGTAC AAAGTGGTTG 1021 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 1081 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGA 1141 AATGTCGACT TATAACTCGC GCACGCGTTA AGTCgacaat caacctctgg attacaaaat 1201 ttgtgaaaga tt