Construct: ORF TRCN0000491330

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021397.2_s317c1
DNA Barcode:
GCCGAGCGGATCGATCCCAGCGGT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
CLK3 (1198)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491330
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1198 CLK3 CDC like kinase 3 NM_003992.4 99.4% 100% 1470_1471insTGAAAGCT
2 human 1198 CLK3 CDC like kinase 3 NM_001130028.1 76.4% 76.8% 1_444del;1914_1915insTGAAAGCT
3 mouse 102414 Clk3 CDC-like kinase 3 XM_006510739.3 92.2% 98.7% (many diffs)
4 mouse 102414 Clk3 CDC-like kinase 3 XM_017313060.1 92.2% 98.7% (many diffs)
5 mouse 102414 Clk3 CDC-like kinase 3 NM_007713.4 70.9% 75.8% (many diffs)
6 mouse 102414 Clk3 CDC-like kinase 3 XM_017313061.1 51.4% 54.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1536
ORF length:
1470
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaacaat
61tgaccatgca tcactgtaag cgataccgct cccctgaacc agacccgtac ctgagctacc
121gatggaagag gaggaggtcc tacagtcggg aacatgaagg gagactgcga tacccgtccc
181gaagggagcc tcccccacga agatctcggt ccagaagcca tgaccgcctg ccctaccaga
241ggaggtaccg ggagcgccgt gacagcgata cataccggtg tgaagagcgg agcccatcct
301ttggagagga ctactatgga ccttcacgtt ctcgtcatcg tcggcgatcg cgggagaggg
361ggccataccg gacccgcaag catgcccacc actgccacaa acgccgcacc aggtcttgta
421gcagcgcctc ctcgagaagc caacagagca gtaagcgcag cagccggagt gtggaagatg
481acaaggaggg tcacctggtg tgccggatcg gcgattggct ccaagagcga tatgagattg
541tggggaacct gggtgaaggc acctttggca aggtggtgga gtgcttggac catgccagag
601ggaagtctca ggttgccctg aagatcatcc gcaacgtggg caagtaccgg gaggctgccc
661ggctagaaat caacgtgctc aaaaaaatca aggagaagga caaagaaaac aagttcctgt
721gtgtcttgat gtctgactgg ttcaacttcc acggtcacat gtgcatcgcc tttgagctcc
781tgggcaagaa cacctttgag ttcctgaagg agaataactt ccagccttac cccctaccac
841atgtccggca catggcctac cagctctgcc acgcccttag atttctgcat gagaatcagc
901tgacccatac agacttgaaa ccagagaaca tcctgtttgt gaattctgag tttgaaaccc
961tctacaatga gcacaagagc tgtgaggaga agtcagtgaa gaacaccagc atccgagtgg
1021ctgactttgg cagtgccaca tttgaccatg agcaccacac caccattgtg gccacccgtc
1081actatcgccc gcctgaggtg atccttgagc tgggctgggc acagccctgt gacgtctgga
1141gcattggctg cattctcttt gagtactacc ggggcttcac actcttccag acccacgaaa
1201accgagagca cctggtgatg atggagaaga tcctagggcc catcccatca cacatgatcc
1261accgtaccag gaagcagaaa tatttctaca aagggggcct agtttGGGAT GAGAACAGCT
1321CTGACGGCCG GTATGTGAAG GAGAACTGCA AACCTCTGAA GAGTTACATG CTCCAAGACT
1381CCCTGGAGCA CGTGCAGCTG TTTGACCTGA TGAGGAGGAT GTTAGAATTT GACCCTGCCC
1441AGCGCATCAC ACTGGCCGAG GCCCTGCTGC ACCCCTTCTT TGCTGGCCTG ACCCCTGAGG
1501AGCGGTCCTT CCACACCAGC CGCAACCCAA GCAGATGAAA GCTTGACCCA GCTTTCTTGT
1561ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1621AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1681GAAAGGACGA GCCGAGCGGA TCGATCCCAG CGGTACGCGT TAAGTCgaca atcaacctct
1741ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)