Construct: ORF TRCN0000491521

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019727.2_s317c1
DNA Barcode:
ACATTGGGACTGTTTCGTTGGCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACVRL1 (94)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491521
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 94 ACVRL1 activin A receptor like type 1 NM_000020.3 96.4% 96.3% 1509_1510ins55
2 human 94 ACVRL1 activin A receptor like type 1 NM_001077401.2 96.4% 96.3% 1509_1510ins55
3 human 94 ACVRL1 activin A receptor like type 1 XM_005269235.2 96.4% 96.3% 1509_1510ins55
4 human 94 ACVRL1 activin A receptor like type 1 XM_011539008.1 74.5% 74.4% 1_42del;353_354ins312;1239_1240ins55
5 human 94 ACVRL1 activin A receptor like type 1 XM_024449279.1 46% 45.9% 0_1ins789;720_721ins55
6 mouse 11482 Acvrl1 activin A receptor, type II... NM_001277257.1 82% 85.2% (many diffs)
7 mouse 11482 Acvrl1 activin A receptor, type II... NM_001277258.1 82% 85.2% (many diffs)
8 mouse 11482 Acvrl1 activin A receptor, type II... NM_001277259.1 82% 85.2% (many diffs)
9 mouse 11482 Acvrl1 activin A receptor, type II... NM_009612.3 82% 85.2% (many diffs)
10 mouse 11482 Acvrl1 activin A receptor, type II... NM_001277255.1 79.7% 82.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1635
ORF length:
1566
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gaccttgggc tcccccagga aaggccttct gatgctgctg atggccttgg
121tgacccaggg agaccctgtg aagccgtctc ggggcccgct ggtgacctgc acgtgtgaga
181gcccacattg caaggggcct acctgccggg gggcctggtg cacagtagtg ctggtgcggg
241aggaggggag gcacccccag gaacatcggg gctgcgggaa cttgcacagg gagctctgca
301gggggcgccc caccgagttc gtcaaccact actgctgcga cagccacctc tgcaaccaca
361acgtgtccct ggtgctggag gccacccaac ctccttcgga gcagccggga acagatggcc
421agctggccct gatcctgggc cccgtgctgg ccttgctggc cctggtggcc ctgggtgtcc
481tgggcctgtg gcatgtccga cggaggcagg agaagcagcg tggcctgcac agcgagctgg
541gagagtccag tctcatcctg aaagcatctg agcagggcga cagcatgttg ggggacctcc
601tggacagtga ctgcaccaca gggagtggct cagggctccc cttcctggtg cagaggacag
661tggcacggca ggttgccttg gtggagtgtg tgggaaaagg ccgctatggc gaagtgtggc
721ggggcttgtg gcacggtgag agtgtggccg tcaagatctt ctcctcgagg gatgaacagt
781cctggttccg ggagactgag atctataaca cagtgttgct cagacacgac aacatcctag
841gcttcatcgc ctcagacatg acctcccgca actcgagcac gcagctgtgg ctcatcacgc
901actaccacga gcacggctcc ctctacgact ttctgcagag acagacgctg gagccccatc
961tggctctgag gctagctgtg tccgcggcat gcggcctggc gcacctgcac gtggagatct
1021tcggtacaca gggcaaacca gccattgccc accgcgactt caagagccgc aatgtgctgg
1081tcaagagcaa cctgcagtgt tgcatcgccg acctgggcct ggctgtgatg cactcacagg
1141gcagcgatta cctggacatc ggcaacaacc cgagagtggg caccaagcgg tacatggcac
1201ccgaggtgct ggacgagcag atccgcacgg actgctttga gtcctacaag tggactgaca
1261tctgggcctt tggcctggtg ctgtgggaga ttgcccgccg gaccatcgtg aatggcatcg
1321tggaggacta tagaccaccc ttcTATGATG TGGTGCCCAA TGACCCCAGC TTTGAGGACA
1381TGAAGAAGGT GGTGTGTGTG GATCAGCAGA CCCCCACCAT CCCTAACCGG CTGGCTGCAG
1441ACCCGGTCCT CTCAGGCCTA GCTCAGATGA TGCGGGAGTG CTGGTACCCA AACCCCTCTG
1501CCCGACTCAC CGCGCTGCGG ATCAAGAAGA CACTACAAAA AATTAGCAAC AGTCCAGAGA
1561AGCCTAAAGT GATTCAAGAC CCAGCTTTCT TGTACAAAGT GGTCCCCCCA GAGAAGCCTA
1621AAGTGATTCA AGACCCAGCT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1681ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1741CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAACA TTGGGACTGT TTCGTTGGCC
1801TACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)

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