Construct: ORF TRCN0000491983
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020830.2_s317c1
- DNA Barcode:
- GACACACTGTCACCGACAGACCGT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- TAAR2 (9287)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000491983
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9287 | TAAR2 | trace amine associated rece... | NM_014626.3 | 100% | 100% | |
| 2 | human | 9287 | TAAR2 | trace amine associated rece... | NM_001033080.1 | 87.1% | 87.1% | 1_135del |
| 3 | mouse | 209512 | Taar2 | trace amine-associated rece... | NM_001007266.1 | 77% | 81.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 990
- ORF length:
- 918
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgtattca tttatggcag gatccatatt catcacaata tttggcaatc 121 ttgccatgat aatttccatt tcctacttca agcagcttca cacaccaacc aacttcctca 181 tcctctccat ggccatcact gatttcctcc tgggattcac catcatgcca tatagtatga 241 tcagatcggt ggagaactgc tggtattttg ggcttacatt ttgcaagatt tattatagtt 301 ttgacctgat gcttagcata acatccattt ttcatctttg ctcagtggcc attgatagat 361 tttatgctat atgttaccca ttactttatt ccaccaaaat aactattcca gtcattaaaa 421 gattgctact tctatgttgg tcggtccctg gagcatttgc cttcggggtg gtcttctcag 481 aggcctatgc agatggaata gagggctatg acatcttggt tgcttgttcc agttcctgcc 541 cagtgatgtt caacaagcta tgggggacca ccttgtttat ggcaggtttc ttcactcctg 601 ggtctatgat ggtggGGATT TATGGCAAAA TTTTTGCAGT ATCCAGAAAA CATGCTCATG 661 CCATCAATAA CTTGCGAGAA AATCAAAATA ATCAAGTGAA GAAAGACAAA AAAGCTGCCA 721 AAACTTTAGG AATAGTGATA GGAGTTTTCT TATTATGTTG GTTTCCTTGT TTCTTCACAA 781 TTTTATTGGA TCCCTTTTTG AACTTCTCTA CTCCTGTAGT TTTGTTTGAT GCCTTGACAT 841 GGTTTGGCTA TTTTAACTCC ACATGTAATC CGTTAATATA TGGTTTCTTC TATCCCTGGT 901 TTCGCAGAGC ACTGAAGTAC ATTTTGCTAG GTAAAATTTT CAGCTCATGT TTCCATAATA 961 CTATTTTGTG TATGCAAAAA GAAAGTGAGT AGGACCCAGC TTTCTTGTAC AAAGTGGTTG 1021 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 1081 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGA 1141 CACACTGTCA CCGACAGACC GTACGCGTTA AGTCgacaat caacctctgg attacaaaat 1201 ttgtgaaaga tt