Construct: ORF TRCN0000492350
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019279.2_s317c1
- DNA Barcode:
- CCCATTTCTTTTATGTCCATACAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TAAR2 (9287)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000492350
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9287 | TAAR2 | trace amine associated rece... | NM_001033080.1 | 99.9% | 99.7% | 1053_1054insG |
| 2 | human | 9287 | TAAR2 | trace amine associated rece... | NM_014626.3 | 87% | 86.9% | 0_1ins135;918_919insG |
| 3 | mouse | 209512 | Taar2 | trace amine-associated rece... | NM_001007266.1 | 81.8% | 84.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1131
- ORF length:
- 1056
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatggct gtctcatcag agcaacatga actttcacat ttcaaaagaa 121 cacagacaaa aaaggaaaaa ttcaattgct ctgaatatgg aaatagatct tgcccagaaa 181 atgaaagatc tctgggtgtc cgagtggcta tgtattcatt tatggcagga tccatattca 241 tcacaatatt tggcaatctt gccatgataa tttccatttc ctacttcaag cagcttcaca 301 caccaaccaa cttcctcatc ctctccatgg ccatcactga tttcctcctg ggattcacca 361 tcatgccata tagtatgatc agatcggtgg agaactgctg gtattttggg cttacatttt 421 gcaagattta ttatagtttt gacctgatgc ttagcataac atccattttt catctttgct 481 cagtggccat tgatagattt tatgctatat gttacccatt actttattcc accaaaataa 541 ctattccagt cattaaaaga ttgctacttc tatgttggtc ggtccctgga gcatttgcct 601 tcggggtggt cttctcagag gcctatgcag atggaataga gggctatgac atcttggttg 661 cttgttccag ttcctgccca gtgatgttca acaagctatg ggggaccacc ttgtttatgg 721 caggtttctt cactcctGGG TCTATGATGG TGGGGATTTA TGGCAAAATT TTTGCAGTAT 781 CCAGAAAACA TGCTCATGCC ATCAATAACT TGCGAGAAAA TCAAAATAAT CAAGTGAAGA 841 AAGACAAAAA AGCTGCCAAA ACTTTAGGAA TAGTGATAGG AGTTTTCTTA TTATGTTGGT 901 TTCCTTGTTT CTTCACAATT TTATTGGATC CCTTTTTGAA CTTCTCTACT CCTGTAGTTT 961 TGTTTGATGC CTTGACATGG TTTGGCTATT TTAACTCCAC ATGTAATCCG TTAATATATG 1021 GTTTCTTCTA TCCCTGGTTT CGCAGAGCAC TGAAGTACAT TTTGCTAGGT AAAATTTTCA 1081 GCTCATGTTT CCATAATACT ATTTTGTGTA TGCAAAAAGA AAGTGAGGAC CCAGCTTTCT 1141 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 1201 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 1261 GTGGAAAGGA CGACCCATTT CTTTTATGTC CATACAAACG CGTTAAGTCg acaatcaacc 1321 tctggattac aaaatttgtg aaagatt