Construct: ORF TRCN0000492354
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021088.2_s317c1
- DNA Barcode:
- GTGTTTCGACTCTCGCCAAGTTCG
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- OXTR (5021)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000492354
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5021 | OXTR | oxytocin receptor | NM_000916.3 | 100% | 100% | |
| 2 | human | 5021 | OXTR | oxytocin receptor | NM_001354653.1 | 100% | 100% | |
| 3 | human | 5021 | OXTR | oxytocin receptor | NM_001354654.1 | 100% | 100% | |
| 4 | human | 5021 | OXTR | oxytocin receptor | NM_001354655.1 | 100% | 100% | |
| 5 | human | 5021 | OXTR | oxytocin receptor | NM_001354656.2 | 100% | 100% | |
| 6 | mouse | 18430 | Oxtr | oxytocin receptor | NM_001081147.1 | 86.8% | 92% | (many diffs) |
| 7 | mouse | 18430 | Oxtr | oxytocin receptor | XM_006505723.1 | 86.8% | 92% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1239
- ORF length:
- 1167
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggagggc gcgctcgcag ccaactggag cgccgaggca gccaacgcca 121 gcgccgcgcc gccgggggcc gagggcaacc gcaccgccgg acccccgcgg cgcaacgagg 181 ccctggcgcg cgtggaggtg gcggtgctgt gtctcatcct gctcctggcg ctgagcggga 241 acgcgtgtgt gctgctggcg ctgcgcacca cacgccagaa gcactcgcgc ctcttcttct 301 tcatgaagca cctaagcatc gccgacctgg tggtggcagt gtttcaggtg ctgccgcagt 361 tgctgtggga catcaccttc cgcttctacg ggcccgacct gctgtgccgc ctggtcaagt 421 acttgcaggt ggtgggcatg ttcgcctcca cctacctgct gctgctcatg tccctggacc 481 gctgcctggc catctgccag ccgctgcgct cgctgcgccg ccgcaccgac cgcctggcag 541 tgctcgccac gtggctcggc tgcctggtgg ccagcgcgcc gcaggtgcac atcttctctc 601 tgcgcgaggt ggctgacggc gtcttcgact gctgggccgt cttcatccag ccctggggac 661 ccaaggccta catcacatgg atcacgctag ctgtctacat cgtgccggtc atcgtgctcg 721 ctgcctgcta cggccttatc agcttcaaga TCTGGCAGAA CTTGCGGCTC AAGACCGCTG 781 CAGCGGCGGC GGCCGAGGCG CCAGAGGGCG CGGCGGCTGG CGATGGGGGG CGCGTGGCCC 841 TGGCGCGTGT CAGCAGCGTC AAGCTCATCT CCAAGGCCAA GATCCGCACG GTCAAGATGA 901 CTTTCATCAT CGTGCTGGCC TTCATCGTGT GCTGGACGCC TTTCTTCTTC GTGCAGATGT 961 GGAGCGTCTG GGATGCCAAC GCGCCCAAGG AAGCCTCGGC CTTCATCATC GTCATGCTCC 1021 TGGCCAGCCT CAACAGCTGC TGCAACCCCT GGATCTACAT GCTGTTCACG GGCCACCTCT 1081 TCCACGAACT CGTGCAGCGC TTCCTGTGCT GCTCCGCCAG CTACCTGAAG GGCAGACGCC 1141 TGGGAGAGAC GAGTGCCAGC AAAAAGAGCA ACTCGTCCTC CTTTGTCCTG AGCCATCGCA 1201 GCTCCAGCCA GAGGAGCTGC TCCCAGCCAT CCACGGCGTG AGACCCAGCT TTCTTGTACA 1261 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 1321 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 1381 AGGACGAGTG TTTCGACTCT CGCCAAGTTC GACGCGTTAA GTCgacaatc aacctctgga 1441 ttacaaaatt tgtgaaagat t