Construct: ORF ccsbBroad304_00238
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011374.1_s304c1, BRDN0000411128
- Derived from:
- ccsbBroadEn_00238
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CCNE1 (898)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_00238
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26164 | MTG2 | mitochondrial ribosome asso... | XM_024451870.1 | 71.2% | 3.1% | 0_1ins215 |
| 2 | human | 26164 | MTG2 | mitochondrial ribosome asso... | NM_015666.3 | 59.7% | 3.3% | (many diffs) |
| 3 | human | 26164 | MTG2 | mitochondrial ribosome asso... | XM_005260393.1 | 59.7% | 3.3% | (many diffs) |
| 4 | human | 26164 | MTG2 | mitochondrial ribosome asso... | XM_011528776.1 | 59.7% | 3.3% | (many diffs) |
| 5 | human | 26164 | MTG2 | mitochondrial ribosome asso... | XM_017027806.1 | 59.7% | 3.3% | (many diffs) |
| 6 | human | 26164 | MTG2 | mitochondrial ribosome asso... | XM_006723774.3 | 57.5% | 3.2% | (many diffs) |
| 7 | human | 26164 | MTG2 | mitochondrial ribosome asso... | XM_024451869.1 | 57.5% | 3.2% | (many diffs) |
| 8 | human | 26164 | MTG2 | mitochondrial ribosome asso... | XM_017027805.1 | 55.9% | 3.1% | (many diffs) |
| 9 | human | 26164 | MTG2 | mitochondrial ribosome asso... | XM_017027808.1 | 38.6% | 4.1% | (many diffs) |
| 10 | human | 26164 | MTG2 | mitochondrial ribosome asso... | XM_017027807.1 | 36.2% | 3.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 207
- ORF length:
- 141
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcc gagggagcgc agggagcggg atgcgaagga gcgggacacc atgaaggagg 121 acggcggcgc ggagttctcg gcGCGCTGGG CGGGGCAGGA GGGAAAGGCA ACCGCTTCTT 181 CCTGGCCAAC AACAACCGTG CCCCTGTGAC CTGTACCCCT GGACAGCCAG GACAGCAGCG 241 AGTTCTCCAC CTGGAGCTCA AGACGGTGGC CCACGCCGGA ATGGTGGGAT TCCCCAACGC 301 CGGGAAGTCC TCACTGCTCC GGGCCATTTC AAACGCCAGA CCCGCCGTGG CTTCCTACCC 361 GTTCACCACC CTGAAGCCCC ACGTCGGGAT CGTCCACTAC GAAGGCCACC TACAAATAGC 421 AGTGGCCGAC ATCCCCGGCA TCATACGAGG CGCCCACCAG AACAGGGGTC TGGGGTCCGC 481 CTTCCTCAGG CACATCGAGC GCTGCCGCTT TCTCTTGTTC GTGGTGGATC TTTCTCAGCC 541 TGAGCCGTGG ACTCAAGTTG ACGATTTAAA ATATGAACTG GAGATGTATG AAAAGGGCCT 601 GTCTGCGAGG CCCCACGCAA TCGTCGCAAA CAAGATTGAC CTCCCTGAAG CCCAAGCCAA 661 TCTGTCCCAG CTCCGGGATC ACTTGGGACA GGAGGTCATC GTGCTGTCGG CGTTGACCGG 721 CGAGAACCTG GAGCAGCTGC TGTTGCACCT GAAGGTGCTG TATGACGCCT ACGCGGAGGC 781 CGAGCTGGGC CAGGGCCGCC AGCCGCTCAG GTGGTACCCA ACTTTCTTGT ACaaagtggt 841 tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat gagctagcgc 901 taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a