Construct: ORF ccsbBroad304_00327
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016825.1_s304c1, BRDN0000410186
- Derived from:
- ccsbBroadEn_00327
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLK2 (1196)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_00327
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1196 | CLK2 | CDC like kinase 2 | NM_003993.4 | 100% | 100% | |
| 2 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001294338.2 | 99.7% | 99.7% | 399_401delGCA |
| 3 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001363704.2 | 99.7% | 99.7% | 168_169insAGC |
| 4 | human | 1196 | CLK2 | CDC like kinase 2 | XM_011509143.2 | 99.5% | 99.5% | 168_169insAGC;396_398delGCA |
| 5 | human | 1197 | CLK2P1 | CDC like kinase 2, pseudoge... | NR_002711.3 | 61.6% | (many diffs) | |
| 6 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001294339.2 | 54.4% | 54.4% | 0_1ins681 |
| 7 | mouse | 12748 | Clk2 | CDC-like kinase 2 | NM_007712.4 | 92.3% | 96.7% | (many diffs) |
| 8 | mouse | 12748 | Clk2 | CDC-like kinase 2 | NM_001163432.2 | 92.2% | 96.5% | (many diffs) |
| 9 | mouse | 105943584 | Gm45927 | predicted gene, 45927 | NM_001310016.1 | 56.9% | 57.1% | (many diffs) |
| 10 | mouse | 105943584 | Gm45927 | predicted gene, 45927 | NM_001310017.1 | 30.6% | 28.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1560
- ORF length:
- 1494
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcc gcatcctcga aggtaccact cctcagagcg aggcagccgg gggagttacc 121 gtgaacacta tcggagccga aagcataagc gacgaagaag tcgctcctgg tcaagtagta 181 gtgaccggac acgacggcgt cggcgagagg acagctacca tgtccgttct cgaagcagtt 241 atgatgatcg ttcgtccgac cggagggtgt atgaccggcg atactgtggc agctacagac 301 gcaacgatta tagccgggat cggggagatg cctactatga cacagactat cggcattcct 361 atgaatatca gcgggagaac agcagttacc gcagccagcg cagcagccgg aggaagcaca 421 gacggcggag gaggcgcagc cggacattta gccgctcatc ttcgcacagc agccggagag 481 ccaagagtgt agaggacgac gctgagggcc acctcatcta ccacgtcggg gactggctac 541 aagagcgata tgaaatcgtt agcaccttag gagaggggac cttcggccga gttgtacaat 601 gtgttgacca tcgcaggggt ggggctcgag ttgccctgaa gatcattaag aatgtggaga 661 agtacaagga agcagctcga cttgagatca acgtgctaga gaaaatcaat gagaaagacc 721 ctgacaacaa gaacctctgt gtccagatgt ttgactggtt tgactaccat ggccacatgt 781 gtatctcctt tgagcttctg ggccttagca ccttcgattt cctcaaagac aacaactacc 841 tgccctaccc catccaccaa gtgcgccaca tggccttcca gctgtgccag gctgtcaagt 901 tcctccatga taacaagctg acacatacag acctcaagcc tgaaaatatt ctgtttgtga 961 attcagacta tgagctcacc tacaacctag agaagaagcg agatgagcgc agtgtgaaga 1021 gcacagctgt gcgggtggta gactttggca gtgccacctt tgaccatgag caccatagca 1081 ccattgtctc cactcgccat taccgagcac cagaagtcat ccttgagttg ggctggtcac 1141 agccttgtga tgtgtggagt ataggctgca tcatctttga atactatgtg ggattcaccc 1201 tcttccagac ccatgacaac agagagcatc tagccatgat ggaaaggatc ttgggtccta 1261 tcccttcccg gatgatccga aagacaagaa agcagaaata tttttaccgg ggtcgcctgg 1321 attgggatga gaacacatca gctgggcgct atgttcgtga gaactgcaaa ccgctgcggc 1381 ggtatctgac ctcagaggca gaggaacacc accagctctt cgatctgatt gaaagcatgc 1441 tagagtatga accagctaag cggctgacct tgggtgaagc ccttcagcat cctttcttcg 1501 cccgccttcg ggctgagccg cccaacaagt tgtgggactc cagtcgggat atcagtcggt 1561 gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg 1621 attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct 1681 ggatta