Construct: ORF ccsbBroad304_00553

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009592.1_s304c1, BRDN0000406806
Derived from:
ccsbBroadEn_00553
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GPC4 (2239)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00553
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2239 GPC4 glypican 4 NM_001448.3 100% 100%
2 mouse 14735 Gpc4 glypican 4 NM_008150.2 90.7% 94.4% (many diffs)
3 mouse 14735 Gpc4 glypican 4 XM_011250978.2 82.2% 85.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1734
ORF length:
1668
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc acggttcggc ttgcccgcgc ttctctgcac cctggcagtg ctcagcgccg
121cgctgctggc tgccgagctc aagtcgaaaa gttgctcgga agtgcgacgt ctttacgtgt
181ccaaaggctt caacaagaac gatgcccccc tccacgagat caacggtgat catttgaaga
241tctgtcccca gggttctacc tgctgctctc aagagatgga ggagaagtac agcctgcaaa
301gtaaagatga tttcaaaagt gtggtcagcg aacagtgcaa tcatttgcaa gctgtctttg
361cttcacgtta caagaagttt gatgaattct tcaaagaact acttgaaaat gcagagaaat
421ccctgaatga tatgtttgtg aagacatatg gccatttata catgcaaaat tctgagctat
481ttaaagatct cttcgtagag ttgaaacgtt actacgtggt gggaaatgtg aacctggaag
541aaatgctaaa tgacttctgg gctcgcctcc tggagcggat gttccgcctg gtgaactccc
601agtaccactt tacagatgag tatctggaat gtgtgagcaa gtatacggag cagctgaagc
661ccttcggaga tgtccctcgc aaattgaagc tccaggttac tcgtgctttt gtagcagccc
721gtactttcgc tcaaggctta gcggttgcgg gagatgtcgt gagcaaggtc tccgtggtaa
781accccacagc ccagtgtacc catgccctgt tgaagatgat ctactgctcc cactgccggg
841gtctcgtgac tgtgaagcca tgttacaact actgctcaaa catcatgaga ggctgtttgg
901ccaaccaagg ggatctcgat tttgaatgga acaatttcat agatgctatg ctgatggtgg
961cagagaggct agagggtcct ttcaacattg aatcggtcat ggatcccatc gatgtgaaga
1021tttctgatgc tattatgaac atgcaggata atagtgttca agtgtctcag aaggttttcc
1081agggatgtgg accccccaag cccctcccag ctggacgaat ttctcgttcc atctctgaaa
1141gtgccttcag tgctcgcttc agaccacatc accccgagga acgcccaacc acagcagctg
1201gcactagttt ggaccgactg gttactgatg tcaaggagaa actgaaacag gccaagaaat
1261tctggtcctc ccttccgagc aacgtttgca acgatgagag gatggctgca ggaaacggca
1321atgaggatga ctgttggaat gggaaaggca aaagcaggta cctgtttgca gtgacaggaa
1381atggattagc caaccagggc aacaacccag aggtccaggt tgacaccagc aaaccagaca
1441tactgatcct tcgtcaaatc atggctcttc gagtgatgac cagcaagatg aagaatgcat
1501acaatgggaa cgacgtggac ttctttgata tcagtgatga aagtagtgga gaaggaagtg
1561gaagtggctg tgagtatcag cagtgccctt cagagtttga ctacaatgcc actgaccatg
1621ctgggaagag tgccaatgag aaagccgaca gtgctggtgt ccgtcctggg gcacaggcct
1681acctcctcac tgtcttctgc atcttgttcc tggttatgca gagagagtgg agatacccaa
1741ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
1801cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)