Construct: ORF ccsbBroad304_00748

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012297.1_s304c1, BRDN0000408984
Derived from:
ccsbBroadEn_00748
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MR1 (3140)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00748
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3140 MR1 major histocompatibility co... NM_001194999.1 100% 100%
2 human 3140 MR1 major histocompatibility co... NM_001531.2 86.8% 86.8% 327_461del
3 human 3140 MR1 major histocompatibility co... XM_011509463.2 80.4% 73.4% (many diffs)
4 human 3140 MR1 major histocompatibility co... XM_024446611.1 78.2% 78.2% 327_461del;601_602ins87
5 human 3140 MR1 major histocompatibility co... NM_001195000.1 59.8% 59.8% 327_461del;603_604ins276
6 human 3140 MR1 major histocompatibility co... NM_001195035.1 48.8% 49.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
954
ORF length:
888
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg ggaactgatg gcgttcctgt tacctctcat cattgtgtta atggtgaagc
121acagcgattc ccggacgcac tctctgagat attttcgcct gggcgtttcg gatcccatcc
181atggggtccc tgaatttatt tcggttgggt acgtggactc gcaccctatc accacatatg
241acagtgtcac tcggcagaag gagccacggg ccccatggat ggcagagaac ctcgcgcctg
301atcactggga gaggtacact cagctgctga ggggctggca gcagatgttc aaggtggaac
361tgaagcgcct acagaggcac tacaatcact cagataatgt ggctcacacc atcaagcagg
421catgggaggc caatcagcat gagttgctgt atcaaaagaa ttggctggaa gaagaatgta
481ttgcctggct aaagagattc ctggagtatg ggaaagacac cctacaaaga acagagcccc
541cactggtcag agtaaatcgc aaagaaactt ttccaggggt tacagctctc ttctgcaaag
601ctcatggctt ttacccccca gaaatttaca tgacatggat gaaaaacggg gaagaaattg
661tccaagaaat tgattatgga gacattcttc ccagtgggga tggaacctat caggcgtggg
721catcaattga gcttgatcct cagagcagca acctttactc ctgtcatgtg gagcactgcg
781gtgtccacat ggttcttcag gtcccccagg aatcagaaac tatccctctt gtgatgaaag
841ctgtctctgg gtccattgtc cttgtcattg tgctggctgg agttggtgtt ctagtctgga
901gaagaaggcc ccgagagcaa aatggagcca tctaccttcc aacaccagat cgatgcccaa
961ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
1021cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)