Transcript: Human NM_001195000.1

Homo sapiens major histocompatibility complex, class I-related (MR1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
MR1 (3140)
Length:
7584
CDS:
162..911

Additional Resources:

NCBI RefSeq record:
NM_001195000.1
NBCI Gene record:
MR1 (3140)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001195000.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000057289 GTCTCACACTTACCAGAGAAT pLKO.1 491 CDS 100% 4.950 6.930 N MR1 n/a
2 TRCN0000373069 CCAACACCAGATCGATGATTG pLKO_005 894 CDS 100% 10.800 8.640 N MR1 n/a
3 TRCN0000378920 TCGCACCCTATCACCACATAT pLKO_005 315 CDS 100% 13.200 9.240 N MR1 n/a
4 TRCN0000057292 GAATCAGAAACTATCCCTCTT pLKO.1 765 CDS 100% 4.050 2.835 N MR1 n/a
5 TRCN0000057291 CCGGACGCACTCTCTGAGATA pLKO.1 227 CDS 100% 1.650 1.155 N MR1 n/a
6 TRCN0000057290 CAGCATGAGTTGCTGTATCAA pLKO.1 666 CDS 100% 0.563 0.394 N MR1 n/a
7 TRCN0000128227 CAGGAGAATCACTTGAATCTA pLKO.1 2671 3UTR 100% 5.625 2.813 Y NLRP8 n/a
8 TRCN0000138391 CGCCTGTAATCCTAGCACTTT pLKO.1 2503 3UTR 100% 4.950 2.475 Y DENND6A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001195000.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00748 pDONR223 100% 59.8% 59.8% None 327_461del;603_604ins276 n/a
2 ccsbBroad304_00748 pLX_304 0% 59.8% 59.8% V5 327_461del;603_604ins276 n/a
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