Construct: ORF ccsbBroad304_00767

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018135.1_s304c1, BRDN0000461417
Derived from:
ccsbBroadEn_00767
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPH1 (3187)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00767
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001257293.2 100% 100%
2 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364233.1 100% 100%
3 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364234.1 100% 100%
4 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364235.1 100% 100%
5 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364236.2 100% 100%
6 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364237.2 100% 100%
7 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364238.2 100% 100%
8 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364239.2 100% 100%
9 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_005520.3 100% 100%
10 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364231.2 99.3% 99.1% 1208_1216delGTAAATATC
11 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364241.2 98.4% 98.4% 785_786ins21
12 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364242.2 98.4% 98.4% 785_786ins21
13 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364243.2 98.4% 98.4% 785_786ins21
14 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364244.2 97.7% 97.5% 1177_1178ins30
15 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364246.2 95.5% 95.5% 1057_1058ins60
16 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364247.2 95.5% 95.5% 1057_1058ins60
17 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001363572.2 95.3% 95.3% (many diffs)
18 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364245.2 95.3% 95.3% (many diffs)
19 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364248.2 93.7% 93.7% (many diffs)
20 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364225.1 93.3% 92.5% (many diffs)
21 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364226.1 93.3% 92.5% (many diffs)
22 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364227.2 93.3% 92.5% (many diffs)
23 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364228.2 93.3% 92.5% (many diffs)
24 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364229.2 93.3% 92.5% (many diffs)
25 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364230.2 88.8% 88.1% (many diffs)
26 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364232.2 88.8% 88.1% (many diffs)
27 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364250.2 88.4% 88.4% 96_97ins156
28 human 3188 HNRNPH2 heterogeneous nuclear ribon... NM_001032393.2 87.6% 96.2% (many diffs)
29 human 3188 HNRNPH2 heterogeneous nuclear ribon... NM_019597.5 87.6% 96.2% (many diffs)
30 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364240.2 87.4% 86.6% (many diffs)
31 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364254.2 55.2% 55.2% 0_1ins603
32 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364255.2 55.2% 55.2% 0_1ins603
33 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364251.2 50.9% 50% (many diffs)
34 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364252.2 50.9% 50% (many diffs)
35 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364253.1 50.9% 50% (many diffs)
36 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... NM_021510.2 96.4% 99.7% (many diffs)
37 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314690.1 96.4% 99.7% (many diffs)
38 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314691.1 96.4% 99.7% (many diffs)
39 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314692.1 94.9% 98.2% (many diffs)
40 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314693.1 94.9% 98.2% (many diffs)
41 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533881.2 94.2% 97.3% (many diffs)
42 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533883.2 91.7% 95.1% (many diffs)
43 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314694.1 90.2% 93.5% (many diffs)
44 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... NM_001347487.1 90% 92.3% (many diffs)
45 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533876.3 90% 92.3% (many diffs)
46 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533877.3 90% 92.3% (many diffs)
47 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533878.1 88.6% 90.9% (many diffs)
48 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533879.1 87.9% 90% (many diffs)
49 mouse 56258 Hnrnph2 heterogeneous nuclear ribon... NM_001313716.1 85.6% 95.7% (many diffs)
50 mouse 56258 Hnrnph2 heterogeneous nuclear ribon... NM_001313717.1 85.6% 95.7% (many diffs)
51 mouse 56258 Hnrnph2 heterogeneous nuclear ribon... NM_019868.4 85.6% 95.7% (many diffs)
52 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533880.2 85.5% 87.9% (many diffs)
53 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314696.1 53% 55.2% (many diffs)
54 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314697.1 51.5% 53.6% (many diffs)
55 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533884.2 48.9% 50.1% (many diffs)
56 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314695.1 48.9% 50.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1413
ORF length:
1347
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgat gttgggcacg gaaggtggag agggattcgt ggtgaaggtc cggggcttgc
121cctggtcttg ctcggccgat gaagtgcaga ggtttttttc tgactgcaaa attcaaaatg
181gggctcaagg tattcgtttc atctacacca gagaaggcag accaagtggc gaggcttttg
241ttgaacttga atcagaagat gaagtcaaat tggccctgaa aaaagacaga gaaactatgg
301gacacagata tgttgaagta ttcaagtcaa acaacgttga aatggattgg gtgttgaagc
361atactggtcc aaatagtcct gacacggcca atgatggctt tgtacggctt agaggacttc
421cctttggatg tagcaaggaa gaaattgttc agttcttctc agggttggaa atcgtgccaa
481atgggataac attgccggtg gacttccagg ggaggagtac gggggaggcc ttcgtgcagt
541ttgcttcaca ggaaatagct gaaaaggctc taaagaaaca caaggaaaga atagggcaca
601ggtatattga aatctttaag agcagtagag ctgaagttag aactcattat gatccaccac
661gaaagcttat ggccatgcag cggccaggtc cttatgacag acctggggct ggtagagggt
721ataacagcat tggcagagga gctggctttg agaggatgag gcgtggtgct tatggtggag
781gctatggagg ctatgatgat tacaatggct ataatgatgg ctatggattt gggtcagata
841gatttggaag agacctcaat tactgttttt caggaatgtc tgatcacaga tacggggatg
901gtggctctac tttccagagc acaacaggac actgtgtaca catgcgggga ttaccttaca
961gagctactga gaatgacatt tataattttt tttcaccgct caaccctgtg agagtacaca
1021ttgaaattgg tcctgatggc agagtaactg gtgaagcaga tgtcgagttc gcaactcatg
1081aagatgctgt ggcagctatg tcaaaagaca aagcaaatat gcaacacaga tatgtagaac
1141tcttcttgaa ttctacagca ggagcaagcg gtggtgctta cgaacacaga tatgtagaac
1201tcttcttgaa ttctacagca ggagcaagcg gtggtgctta tggtagccaa atgatgggag
1261gcatgggctt gtcaaaccag tccagctacg ggggcccagc cagccagcag ctgagtgggg
1321gttacggagg cggctacggt ggccagagca gcatgagtgg atacgaccaa gttttacagg
1381aaaactccag tgattttcaa tcaaacattg catacccaac tttcttgtac aaagtggttg
1441gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1501accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)