Construct: ORF ccsbBroad304_01131

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017984.1_s304c1, BRDN0000410366
Derived from:
ccsbBroadEn_01131
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
OXCT1 (5019)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01131
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5019 OXCT1 3-oxoacid CoA-transferase 1 NM_000436.4 100% 100%
2 human 5019 OXCT1 3-oxoacid CoA-transferase 1 NM_001364301.2 99.6% 99.6% 725_726insGGTAGA
3 human 5019 OXCT1 3-oxoacid CoA-transferase 1 NM_001364299.2 98.6% 98.6% 413_433del
4 human 5019 OXCT1 3-oxoacid CoA-transferase 1 NM_001364300.2 96.9% 94.5% (many diffs)
5 human 5019 OXCT1 3-oxoacid CoA-transferase 1 NM_001364302.2 94.2% 94.2% 1248_1249ins90
6 human 5019 OXCT1 3-oxoacid CoA-transferase 1 XR_001742081.2 68.5% (many diffs)
7 human 5019 OXCT1 3-oxoacid CoA-transferase 1 NM_001364303.1 64.1% 63.8% 0_1ins557;2T>A;5_5delTinsGA
8 human 5019 OXCT1 3-oxoacid CoA-transferase 1 NR_157114.2 45.1% 1_67del;1165_1166ins73;1555_3221del
9 mouse 67041 Oxct1 3-oxoacid CoA transferase 1 NM_024188.6 86.6% 92.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1626
ORF length:
1560
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggctctcaaa ctcctctcct ccgggcttcg gctctgcgcc tctgcccgcg
121gatctggggc aacctggtac aagggatgtg tttgttcctt ttccaccagt gctcatcgcc
181ataccaagtt ttatacagat ccagtagaag ctgtaaaaga catccctgat ggtgccacgg
241ttttggttgg tggttttggg ctatgtggaa ttccagagaa tcttatagat gctttactga
301aaactggagt aaaaggacta actgcagtca gcaacaatgc aggggttgac aattttggtt
361tggggctttt gcttcggtcc aagcagataa aacgcatggt ctcttcatat gtgggagaaa
421atgcagaatt tgaacgacag tacttatctg gtgaattaga agtggagctg acaccacagg
481gcacacttgc agagaggatc cgtgcaggcg gggctggagt tcctgcattt tacaccccaa
541cagggtatgg gaccctggta caagaaggag gatcgcccat caaatacaac aaagatggca
601gtgttgccat tgccagtaag ccaagagagg tgagggagtt caatggtcag cactttattt
661tggaggaagc aattacaggg gattttgctt tggtgaaagc ctggaaggcg gaccgagcag
721gaaacgtgat tttcaggaaa agtgcaagga atttcaactt gccaatgtgc aaagctgcag
781aaaccacagt ggtagaggtt gaagaaattg tggatattgg agcatttgct ccagaagaca
841tccatattcc tcagatttat gtacatcgcc ttataaaggg agaaaaatat gagaaaagaa
901ttgagcgttt atcaatccgg aaagagggag atggggaagc caaatctgct aaacctggag
961atgacgtaag ggaacgaatc atcaagaggg ccgctcttga gtttgaggat ggcatgtatg
1021ctaatttggg cataggaatc cctctcctgg ccagcaattt tatcagccca aatataactg
1081ttcatcttca aagtgaaaat ggagttctgg gtttgggtcc atatccacga caacatgaag
1141ctgatgcaga tctcatcaat gcaggcaagg aaacagttac tattcttcca ggagcctctt
1201ttttctccag cgatgaatca tttgcaatga ttagaggtgg acacgtcgat ctgacaatgc
1261taggagcgat gcaggtttcc aaatatggtg acctggctaa ctggatgata cctgggaaga
1321tggtgaaagg aatgggaggt gctatggatt tagtgtccag tgcgaaaacc aaagtggtgg
1381tcaccatgga gcattctgca aagggaaatg cacataaaat catggagaaa tgtacattac
1441cattgactgg aaagcaatgt gtcaaccgca ttattactga aaaggctgtg tttgatgtgg
1501acaagaagaa agggttgact ctgattgagc tctgggaagg cctgacagtg gatgacgtac
1561agaagagtac tgggtgtgat tttgcagttt caccaaaact catgccaatg cagcagatcg
1621caaattgccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1681gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1741acctctggat ta

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