Construct: ORF ccsbBroad304_01155

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001855.1_s304c1, BRDN0000407520
Derived from:
ccsbBroadEn_01155
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDK16 (5127)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01155
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5127 CDK16 cyclin dependent kinase 16 NM_006201.5 100% 100%
2 human 5127 CDK16 cyclin dependent kinase 16 XM_017029570.2 100% 100%
3 human 5127 CDK16 cyclin dependent kinase 16 XM_017029571.1 100% 100%
4 human 5127 CDK16 cyclin dependent kinase 16 XM_017029572.2 100% 100%
5 human 5127 CDK16 cyclin dependent kinase 16 XM_017029573.1 100% 100%
6 human 5127 CDK16 cyclin dependent kinase 16 NM_033018.4 98.8% 98.8% 1_18del
7 human 5127 CDK16 cyclin dependent kinase 16 XM_011543924.2 97.5% 96.8% (many diffs)
8 human 5127 CDK16 cyclin dependent kinase 16 XM_011543925.3 97.5% 96.8% (many diffs)
9 human 5127 CDK16 cyclin dependent kinase 16 XM_011543926.1 97.5% 96.8% (many diffs)
10 human 5127 CDK16 cyclin dependent kinase 16 XM_011543927.3 97.5% 96.8% (many diffs)
11 human 5127 CDK16 cyclin dependent kinase 16 XM_011543928.1 97.5% 96.8% (many diffs)
12 human 5127 CDK16 cyclin dependent kinase 16 XM_011543923.2 96.3% 95.6% (many diffs)
13 human 5127 CDK16 cyclin dependent kinase 16 XM_017029569.1 91.3% 91.3% 1_141del
14 human 5127 CDK16 cyclin dependent kinase 16 XM_011543922.1 89.8% 89.1% (many diffs)
15 human 5127 CDK16 cyclin dependent kinase 16 XM_011543921.1 89.1% 88.5% (many diffs)
16 human 5127 CDK16 cyclin dependent kinase 16 NM_001170460.1 87% 87% 1_222del
17 human 5127 CDK16 cyclin dependent kinase 16 XM_011543920.3 85% 84.3% (many diffs)
18 human 5127 CDK16 cyclin dependent kinase 16 XR_949017.3 44.7% 1_327del;1119_1120ins124;1692_2923del
19 mouse 18555 Cdk16 cyclin-dependent kinase 16 NM_011049.5 91.8% 97.5% (many diffs)
20 mouse 18555 Cdk16 cyclin-dependent kinase 16 XM_006527570.1 91.8% 97.5% (many diffs)
21 mouse 18555 Cdk16 cyclin-dependent kinase 16 XM_017318424.1 90.4% 94.6% (many diffs)
22 mouse 18555 Cdk16 cyclin-dependent kinase 16 NM_001310456.1 83.1% 87.2% (many diffs)
23 mouse 18555 Cdk16 cyclin-dependent kinase 16 XM_017318425.1 83.1% 87.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1554
ORF length:
1488
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga tcggatgaag aagatcaaac ggcagctgtc aatgacactc cgaggtggcc
121gaggcataga caagaccaat ggtgcccctg agcagatagg cctggatgag agtggtggtg
181gtggcggcag tgaccctgga gaggccccca cacgtgctgc tcctggggaa cttcgttctg
241cacggggccc actcagctct gcaccagaga ttgtgcacga ggacttgaag atggggtctg
301atggggagag tgaccaggct tcagccacgt cctcggatga ggtgcagtct ccagtgagag
361tgcgtatgcg caaccatccc ccacgcaaga tctccactga ggacatcaac aagcgcctat
421cactaccagc tgacatccgg ctgcctgagg gctacctgga gaagctgacc ctcaatagcc
481ccatctttga caagcccctc agccgccgcc tccgtcgtgt cagcctatct gagattggct
541ttgggaaact ggagacctac attaagctgg acaaactggg cgagggtacc tatgccaccg
601tctacaaagg caaaagcaag ctcacagaca accttgtggc actcaaggag atcagactgg
661aacatgaaga gggggcaccc tgcaccgcca tccgggaagt gtccctgctc aaggacctca
721aacacgccaa catcgttacg ctacatgaca ttatccacac ggagaagtcc ctcacccttg
781tctttgagta cctggacaag gacctgaagc agtacctgga tgactgtggg aacatcatca
841acatgcacaa cgtgaaactg ttcctgttcc agctgctccg tggcctggcc tactgccacc
901ggcagaaggt gctacaccga gacctcaagc cccagaacct gctcatcaac gagaggggag
961agctcaagct ggctgacttt ggcctggccc gagccaagtc aatcccaaca aagacatact
1021ccaatgaggt ggtgacactg tggtaccggc cccctgacat cctgcttggg tccacggact
1081actccactca gattgacatg tggggtgtgg gctgcatctt ctatgagatg gccacaggcc
1141gtcccctctt tccgggctcc acggtggagg aacagctaca cttcatcttc cgtatcttag
1201gaaccccaac tgaggagacg tggccaggca tcctgtccaa cgaggagttc aagacataca
1261actaccccaa gtaccgagcc gaggcccttt tgagccacgc accccgactt gatagcgacg
1321gggccgacct cctcaccaag ctgttgcagt ttgagggtcg aaatcggatc tccgcagagg
1381atgccatgaa acatccattc ttcctcagtc tgggggagcg gatccacaaa cttcctgaca
1441ctacttccat atttgcacta aaggagattc agctacaaaa ggaggccagc cttcggtctt
1501cgtcgatgcc tgactcaggc aggccagctt tccgcgtggt ggacaccgag ttctacccaa
1561ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
1621cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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