Construct: ORF ccsbBroad304_01566

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004210.1_s304c1, BRDN0000399456
Derived from:
ccsbBroadEn_01566
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNRPA (6626)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01566
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6626 SNRPA small nuclear ribonucleopro... NM_004596.5 100% 100%
2 mouse 53607 Snrpa small nuclear ribonucleopro... NM_001046637.1 86.8% 94% (many diffs)
3 mouse 53607 Snrpa small nuclear ribonucleopro... NM_001285825.1 86.8% 94% (many diffs)
4 mouse 53607 Snrpa small nuclear ribonucleopro... NM_015782.3 86.8% 94% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
912
ORF length:
846
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc agttcccgag acccgcccta accacactat ttatatcaac aacctcaatg
121agaagatcaa gaaggatgag ctaaaaaagt ccctgtacgc catcttctcc cagtttggcc
181agatcctgga tatcctggta tcacggagcc tgaagatgag gggccaggcc tttgtcatct
241tcaaggaggt cagcagcgcc accaacgccc tgcgctccat gcagggtttc cctttctatg
301acaaacctat gcgtatccag tatgccaaga ccgactcaga tatcattgcc aagatgaaag
361gcaccttcgt ggagcgggac cgcaagcggg agaagaggaa gcccaagagc caggagaccc
421cggccaccaa gaaggctgtg caaggcgggg gagccacccc cgtggtgggg gctgtccagg
481ggcctgtccc gggcatgccg ccgatgactc aggcgccccg cattatgcac cacatgccgg
541gccagccgcc ctacatgccg ccccctggta tgatcccccc gccaggcctt gcacctggcc
601agatcccacc aggggccatg cccccgcagc agcttatgcc aggacagatg ccccctgccc
661agcctctttc tgagaatcca ccgaatcaca tcttgttcct caccaacctg ccagaggaga
721ccaacgagct catgctgtcc atgcttttca atcagttccc tggcttcaag gaggtccgtc
781tggtacccgg gcggcatgac atcgccttcg tggagtttga caatgaggta caggcagggg
841cagctcgcga tgccctgcag ggctttaaga tcacgcagaa caacgccatg aagatctcct
901ttgccaagaa gtacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
961tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1021caatcaacct ctggatta

Download FASTA (ORF) (Full)

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