Construct: ORF ccsbBroad304_01717

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005740.1_s304c1, BRDN0000410892
Derived from:
ccsbBroadEn_01717
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TSHR (7253)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01717
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7253 TSHR thyroid stimulating hormone... NM_001018036.3 100% 100%
2 human 7253 TSHR thyroid stimulating hormone... XM_005268039.1 100% 100%
3 human 7253 TSHR thyroid stimulating hormone... NM_001142626.3 92.3% 92.3% 693_755del
4 human 7253 TSHR thyroid stimulating hormone... XM_006720245.1 92.3% 92.3% 693_755del
5 human 7253 TSHR thyroid stimulating hormone... NM_000369.3 32% 30.1% (many diffs)
6 human 7253 TSHR thyroid stimulating hormone... XM_005268037.4 32% 30.1% (many diffs)
7 human 7253 TSHR thyroid stimulating hormone... XM_011537119.2 19.6% 16.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
825
ORF length:
759
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag gccggcggac ttgctgcagc tggtgctgct gctcgacctg cccagggacc
121tgggcggaat ggggtgttcg tctccaccct gcgagtgcca tcaggaggag gacttcagag
181tcacctgcaa ggatattcaa cgcatcccca gcttaccgcc cagtacgcag actctgaagc
241ttattgagac tcacctgaga actattccaa gtcatgcatt ttctaatctg cccaatattt
301ccagaatcta cgtatctata gatgtgactc tgcagcagct ggaatcacac tccttctaca
361atttgagtaa agtgactcac atagaaattc ggaataccag gaacttaact tacatagacc
421ctgatgccct caaagagctc cccctcctaa agttccttgg cattttcaac actggactta
481aaatgttccc tgacctgacc aaagtttatt ccactgatat attctttata cttgaaatta
541cagacaaccc ttacatgacg tcaatccctg tgaatgcttt tcagggacta tgcaatgaaa
601ccttgacact gaagctgtac aacaatggct ttacttcagt ccaaggatat gctttcaatg
661ggacaaagct ggatgctgtt tacctaaaca agaataaata cctgacagtt attgacaaag
721atgcatttgg aggagtatac agtggaccaa gcttgctgct acctcttgga agaaagtcct
781tgtcctttga gactcagaag gccccacgct ccagtatgcc atcatgccca actttcttgt
841acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
901gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)