Construct: ORF ccsbBroad304_01996

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005068.1_s304c1, BRDN0000460943
Derived from:
ccsbBroadEn_01996
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
B3GALT1 (8708)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01996
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8708 B3GALT1 beta-1,3-galactosyltransfer... NM_020981.3 100% 100%
2 human 8708 B3GALT1 beta-1,3-galactosyltransfer... XM_005246931.3 100% 100%
3 human 8708 B3GALT1 beta-1,3-galactosyltransfer... XM_006712819.3 100% 100%
4 human 8708 B3GALT1 beta-1,3-galactosyltransfer... XM_011512085.2 100% 100%
5 mouse 26877 B3galt1 UDP-Gal:betaGlcNAc beta 1,3... NM_020283.4 90.5% 100% (many diffs)
6 mouse 26877 B3galt1 UDP-Gal:betaGlcNAc beta 1,3... XM_006499591.3 90.5% 100% (many diffs)
7 mouse 26877 B3galt1 UDP-Gal:betaGlcNAc beta 1,3... XM_011239571.2 90.5% 100% (many diffs)
8 mouse 26877 B3galt1 UDP-Gal:betaGlcNAc beta 1,3... XM_011239572.2 90.5% 100% (many diffs)
9 mouse 26877 B3galt1 UDP-Gal:betaGlcNAc beta 1,3... XM_011239573.2 90.5% 100% (many diffs)
10 mouse 26877 B3galt1 UDP-Gal:betaGlcNAc beta 1,3... XM_017318675.1 90.5% 100% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1047
ORF length:
978
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcttcaaag gtctcctgtt tgtatgtttt gacagttgtg tgctgggcca
121gcgctctctg gtacttgagt ataactcgcc ctacttcttc ttacactggc tccaaaccat
181tcagccacct aacagttgcc aggaaaaact tcacctttgg caacataaga actcgaccta
241tcaacccaca ttcttttgaa tttcttatca acgagcccaa taaatgtgag aaaaacattc
301cttttcttgt tatcctcatc agcaccactc acaaggaatt tgatgcccgt caggcaatca
361gagagacgtg gggggatgag aacaacttta aggggatcaa gatagccacc ctgttcctcc
421tgggcaagaa tgctgatcct gttctcaatc agatggtgga gcaagagagc caaatcttcc
481atgatatcat cgtggaggac tttattgact cctaccataa ccttaccctc aaaacattaa
541tggggatgag atgggtggcc actttttgtt caaaagccaa gtatgtcatg aaaacagaca
601gcgacatttt tgtaaacatg gacaatctta tttataaatt actgaaaccc tccaccaagc
661cacgaagaag gtattttact ggctatgtca ttaatggagg accgattcgg gatgtccgca
721gtaagtggta tatgcccagg gatttgtacc cagacagtaa ctacccacct ttctgttcgg
781ggactggcta catcttttca gccgatgtag ctgaactcat ttacaagacc tcactccaca
841caaggctgct tcaccttgaa gacgtatatg tgggactgtg tcttcgaaag ctgggcatac
901atcctttcca gaacagtggc ttcaatcact ggaaaatggc ctacagtttg tgtaggtatc
961gccgagttat cactgtgcat cagatctctc cagaagaaat gcacagaatc tggaatgaca
1021tgtcaagcaa gaaacatctc agatgtttgc caactttctt gtacaaagtg gttggtaagc
1081ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1141ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)