Construct: ORF ccsbBroad304_02355

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017975.1_s304c1, BRDN0000405626
Derived from:
ccsbBroadEn_02355
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FLOT1 (10211)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02355
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10211 FLOT1 flotillin 1 NM_005803.4 100% 100%
2 human 10211 FLOT1 flotillin 1 XM_005248780.3 100% 100%
3 human 10211 FLOT1 flotillin 1 XM_017010157.1 90.7% 88.7% 1_56del;98_99ins68
4 human 10211 FLOT1 flotillin 1 NM_001318875.1 88.7% 88.7% 208_209ins144
5 human 10211 FLOT1 flotillin 1 XM_006714947.3 87.5% 86.8% 42_43ins68;49_50ins91
6 human 10211 FLOT1 flotillin 1 XM_017010158.1 83.3% 83.2% 1_56del;98_99ins167
7 mouse 14251 Flot1 flotillin 1 NM_008027.2 89.7% 98.1% (many diffs)
8 mouse 14251 Flot1 flotillin 1 XM_006523656.3 89.7% 98.1% (many diffs)
9 mouse 14251 Flot1 flotillin 1 XM_006523657.1 72.5% 79.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1347
ORF length:
1281
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt tttcacttgt ggcccaaatg aggccatggt ggtctccggg ttctgccgaa
121gccccccagt catggtggct ggagggcgtg tctttgtcct gccctgcatc caacagatcc
181agaggatctc tctcaacaca ctgaccctca atgtcaagag tgaaaaggtt tacactcgcc
241atggggtccc catctcagtc actggcattg cccaggtaaa aatccagggg cagaacaagg
301agatgttggc ggccgcctgt cagatgttcc tggggaagac ggaggctgag attgcccaca
361ttgccctgga gacgttagag ggccaccaga gggccatcat ggcccacatg actgtggagg
421agatctataa ggacaggcag aaattctcag aacaggtttt caaagtggcc tcctcagacc
481tggtcaacat gggcatcagt gtggttagct acactctgaa ggacattcac gatgaccagg
541actatttgca ctctttgggg aaggctcgaa cagctcaagt ccaaaaagat gcacggattg
601gagaagcaga ggccaagaga gatgctggga tccgggaagc taaagccaag caggaaaagg
661tgtctgctca gtacctgagt gagatcgaga tggccaaggc acagagagat tacgaactga
721agaaggccgc ctatgacatc gaggtcaaca cccgccgagc acaggctgac ctggcctatc
781agcttcaggt ggccaagact aagcagcaga ttgaggagca gcgggtgcag gtgcaggtgg
841tggagcgggc ccagcaggtg gcagtgcagg agcaggagat cgcccggcgg gagaaggagc
901tggaggcccg ggtgcggaag ccagcggaag cggagcgcta caagctggag cgcctagccg
961aggcagagaa gtcccaacta attatgcagg cggaggcaga agccgcgtct gtgcggatgc
1021gtggggaagc tgaggccttt gccatagggg cccgagcccg agccgaggct gagcagatgg
1081ccaagaaggc agaagccttc cagctgtacc aagaggctgc tcagctggac atgctgctag
1141agaagctgcc ccaggtggca gaggagatca gtggtccctt gacttcagcc aataagatca
1201cactggtgtc cagcggcagt gggaccatgg gggcagccaa agtgactggg gaagtactgg
1261acattctaac tcgcctgcca gagagtgtgg aaagactcac aggcgtgagc atctcccagg
1321tgaatcacaa gcctttgaga acagcctgcc caactttctt gtacaaagtg gttggtaagc
1381ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1441ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)

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