Construct: ORF ccsbBroad304_02722

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002912.1_s304c1, BRDN0000410265
Derived from:
ccsbBroadEn_02722
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COLGALT2 (23127)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02722
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23127 COLGALT2 collagen beta(1-O)galactosy... NM_015101.4 100% 100%
2 human 23127 COLGALT2 collagen beta(1-O)galactosy... NM_001303420.2 87.5% 85.1% (many diffs)
3 human 23127 COLGALT2 collagen beta(1-O)galactosy... NM_001303421.2 80.8% 80.8% 0_1ins360
4 mouse 269132 Colgalt2 collagen beta(1-O)galactosy... NM_177756.4 88.5% 92.3% (many diffs)
5 mouse 269132 Colgalt2 collagen beta(1-O)galactosy... XR_001784706.1 37% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1944
ORF length:
1878
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tgcgcgccct gctgccaccc tcgcctggtc gctactgctc ctctcctcag
121ccctgctccg cgaaggctgc cgagcgcgct tcgtcgccga gcgggactcg gaggacgacg
181gagaggagcc ggtggttttc ccggagtcgc ccctgcagag ccccacggtg ctcgtggcgg
241tcctcgcccg caacgcggcg cacacgctgc cgcacttcct cggctgcctg gagcggctgg
301actaccccaa gagcaggatg gccatctggg cagccactga tcacaatgtg gataatacaa
361cagaaatatt cagggagtgg ttgaaaaatg tacagagact ctatcactat gtggagtgga
421ggcctatgga tgaaccagag tcttaccctg atgaaattgg accaaagcac tggccaacct
481cccggtttgc ccatgtgatg aaactacgac aggcagccct tcgaactgcg agggaaaaat
541ggtcagacta cattctgttc atagatgttg acaatttcct gactaatcca cagaccctca
601atctactgat tgcagaaaac aaaactattg tggcccccat gctggagtct cggggcctgt
661attctaattt ctggtgcgga atcaccccta agggcttcta taagaggacc ccagactacg
721ttcagattcg agaatggaag aggacaggct gcttccccgt ccccatggtc cactccacct
781tcctaattga cctcaggaag gaggcctcgg acaagctgac tttctacccc ccacaccagg
841actacacctg gacctttgat gacatcattg tctttgcctt ctccagcagg caagcaggca
901tccagatgta cctctgcaac agagagcact atggctacct gcccatcccc ctgaagcccc
961atcagacact gcaggaagac atcgagaacc tcatccatgt gcagattgaa gcaatgattg
1021accgtcctcc aatggaaccc tcccagtatg tctcagttgt ccctaaatat ccagacaaga
1081tgggatttga tgagattttc atgataaacc tcaaacgcag aaaggacagg cgggaccgga
1141tgctgcgcac actgtatgaa caggagattg aggtcaagat tgtcgaggct gtggatggaa
1201aggcactcaa cacaagccag ctgaaggcac tgaatattga aatgctgcct ggctatcgag
1261atccctattc ctccaggcct ctaacaaggg gtgaaatcgg ctgctttctc agccactact
1321cagtctggaa agaggtaatt gatcgagagc tagagaagac tcttgtaatt gaagacgatg
1381tgcgttttga gcatcagttt aagaagaagc tgatgaagct gatggataac attgaccagg
1441ctcagctgga ctgggaactg atttatattg gtaggaagag gatgcaagta aaggagccag
1501agaaagcagt gcccaatgtg gcaaacctgg tcgaagccga ctattcctac tggaccctgg
1561gctacgtcat ctctctggaa ggagcacaga agctggttgg agccaatcct tttgggaaga
1621tgctgccagt ggatgagttt ctgccagtca tgtacaacaa gcatcccgta gccgagtaca
1681aggagtatta tgaatccagg gacctgaaag ccttctctgc agaacccttg ctcatctacc
1741ctacgcacta cacaggccag ccggggtacc tgagtgacac ggagacctcc accatctggg
1801acaatgagac agtggccacc gactgggata ggacacatgc ctggaagtcc cggaagcaaa
1861gccgcatcta cagcaatgcc aagaacacag aggccctgcc accgccaacc tccctggaca
1921ctgtgccttc aagggatgag ctatgcccaa ctttcttgta caaagtggtt ggtaagccta
1981tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
2041gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)