Construct: ORF ccsbBroad304_03012

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005377.1_s304c1, BRDN0000400879
Derived from:
ccsbBroadEn_03012
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF115 (27246)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03012
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27246 RNF115 ring finger protein 115 NM_014455.4 100% 100%
2 human 27246 RNF115 ring finger protein 115 XM_005272952.5 85.4% 83.6% (many diffs)
3 human 27246 RNF115 ring finger protein 115 XR_001737118.2 49.3% 1_199del;698_699ins73;1039_1628del
4 mouse 67845 Rnf115 ring finger protein 115 NM_026406.3 90.9% 92.7% (many diffs)
5 mouse 67845 Rnf115 ring finger protein 115 XM_006501947.3 79.1% 81.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
978
ORF length:
912
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggaggcttcg gcggccgggg cggactcggg cgccgctgta gccgcccacc
121ggtttttctg ccacttttgc aagggcgagg tcagccccaa actaccggaa tatatatgtc
181ccagatgtga atcaggcttt attgaagaag tgacagatga ttccagtttt ttaggtggtg
241gcggcagtcg gatagacaat accacaacaa cacattttgc agagctttgg ggccatttgg
301atcacacgat gttttttcaa gattttagac cctttctaag tagcagtcca ctggaccaag
361ataatagagc caatgaaagg ggtcaccaga ctcacactga cttctgggga gcaagacctc
421cacggttgcc attgggtcgg agatacagat ctcgaggaag ttctcgtcct gacagatctc
481cagctattga aggaatacta caacacatct ttgcaggatt ctttgcaaat tctgccattc
541ctggatctcc acaccctttt tcctggagcg ggatgctgca ctccaaccct ggggactatg
601cctggggtca gacagggctt gatgccattg taacccagct tttaggacaa ctggaaaaca
661caggccctcc cccagctgac aaggaaaaga tcacatctct tccaacagtg acagtaactc
721aggaacaagt tgatatgggt ttagagtgtc cagtatgcaa agaagattac acagttgaag
781aggaagtccg gcagttacct tgcaatcact tctttcacag cagttgtatt gtgccgtggc
841tagaactgca tgacacatgt cctgtatgta ggaagagctt aaatggtgag gactctactc
901ggcaaagcca gagcactgag gcctctgcaa gcaacagatt tagcaatgac agtcagctac
961atgaccgatg gactttctgc ccaactttct tgtacaaagt ggttggtaag cctatcccta
1021accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1081agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)