Transcript: Human XR_001737118.2

PREDICTED: Homo sapiens ring finger protein 115 (RNF115), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RNF115 (27246)
Length:
1628
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001737118.2
NBCI Gene record:
RNF115 (27246)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001737118.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416451 AGATGTGAATCAGGCTTTATT pLKO_005 317 3UTR 100% 15.000 21.000 N RNF115 n/a
2 TRCN0000433273 ATCTTACCATAGCTGTAAATT pLKO_005 1079 3UTR 100% 15.000 21.000 N RNF115 n/a
3 TRCN0000010871 AGTTGTATTGTGCCGTGGCTA pLKO.1 883 3UTR 100% 2.640 3.696 N RNF115 n/a
4 TRCN0000004393 CCCAAACTACCGGAATATATA pLKO.1 290 3UTR 100% 15.000 10.500 N RNF115 n/a
5 TRCN0000241064 GTATGTAGGAAGAGCTTAAAT pLKO_005 925 3UTR 100% 15.000 10.500 N Rnf115 n/a
6 TRCN0000217118 CTCTGCAAGCAACAGATTTAG pLKO.1 984 3UTR 100% 13.200 9.240 N Rnf115 n/a
7 TRCN0000431809 GAACAAGTTGATATGGGTTTA pLKO_005 784 3UTR 100% 10.800 7.560 N RNF115 n/a
8 TRCN0000004391 CGGATAGACAATACCACAACA pLKO.1 383 3UTR 100% 4.950 3.465 N RNF115 n/a
9 TRCN0000004392 GACCAAGATAATAGAGCCAAT pLKO.1 488 3UTR 100% 4.050 2.835 N RNF115 n/a
10 TRCN0000241060 AGTGACAGATGATTCCAGTTT pLKO_005 343 3UTR 100% 4.950 2.970 N Rnf115 n/a
11 TRCN0000241061 TGAGGACTCTACTCGGCAAAC pLKO_005 948 3UTR 100% 6.000 8.400 N Rnf115 n/a
12 TRCN0000004394 GCGAGGTCAAATTCAGGTAAA pLKO.1 1529 3UTR 100% 10.800 8.640 N RNF115 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001737118.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03012 pDONR223 100% 49.3% None 1_199del;698_699ins73;1039_1628del n/a
2 ccsbBroad304_03012 pLX_304 0% 49.3% V5 1_199del;698_699ins73;1039_1628del n/a
3 TRCN0000469968 GGGCGTCGCTTATCTCATAAGCAC pLX_317 49.7% 49.3% V5 1_199del;698_699ins73;1039_1628del n/a
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